Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3991 141 7e-29 seq2970 138 9e-28 seq1539 123 2e-23 >seq3991 Length=17808 Score = 141 bits (156), Expect = 7e-29 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || ||||| |||||||| || ||| ||||||||| |||||||| || | Sbjct 17030 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 17089 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || ||||| || || || ||||| ||||| || || ||||| || ||| Sbjct 17090 AAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGA 17149 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC-GC-CTCCA 48717 | ||||||||| || | |||||| ||| ||| | | | | || || || ||| | Sbjct 17150 ATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATC--ACTGCTCTCGA 17207 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || |||||||| ||||||||||| |||||||| ||||| Sbjct 17208 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 132 bits (146), Expect = 4e-26 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || ||||| |||||||| || ||| ||||||||| |||||||| || | Sbjct 17258 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 17317 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || | || || || ||||| ||||| || |||||||| || || Sbjct 17318 AAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 17377 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC-GC-CTCCA 48717 | ||||||||| || | |||||| ||| ||| | | | | || || || ||| | Sbjct 17378 ATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATC--ACTGCTCTCGA 17435 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || |||||||| ||||||||||| |||||||| ||||| Sbjct 17436 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 >seq2970 Length=24236 Score = 138 bits (152), Expect = 9e-28 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || ||||| |||||||| || || ||||||||| || |||||||| | | Sbjct 7871 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCT 7812 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || | || || || ||||| ||||| || |||||||| || || Sbjct 7811 AAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 7752 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC-GC-CTCCA 48717 | |||||||||||| | |||||| ||| ||| | | | | | | || || ||| | Sbjct 7751 ATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGG--TATCACTGCTCTCGA 7694 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || |||||||| ||||||||||| |||||||| ||||| Sbjct 7693 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 129 bits (142), Expect = 4e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || ||||| ||||| || || || ||| ||||| || |||||||| | Sbjct 8327 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 8268 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | |||| | || || | || || || ||||| ||||| || |||||||| || || Sbjct 8267 AAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 8208 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC-GC-CTCCA 48717 | |||||||||||| | |||||| ||| ||| | | | | | | || || ||| | Sbjct 8207 ATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGG--TATCACTGCTCTCGA 8150 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || |||||||| ||||||||||| |||||||| ||||| Sbjct 8149 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || ||||| ||||| || || || ||| ||||| || |||||||| | Sbjct 8099 CCTCCCCTGAGGCGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 8040 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | |||| | || || | || || || ||||| ||||| || |||||||| || ||| Sbjct 8039 AAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGA 7980 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| | |||||| ||| | | | | | | || | ||| ||| Sbjct 7979 ATACCTTCCTTGTCAGTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACC 7920 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct 7919 TCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||||| || || || |||||||| || ||||| || | Sbjct 14267 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCC 14208 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || ||||| || || || ||||| ||||| || || ||||||| || Sbjct 14207 AAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGG 14148 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC- 48718 | ||||||||||| || ||| || ||| | |||| || || | | ||| Sbjct 14147 ATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGA-ACTTTCACA 14089 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||| |||| ||||| |||||||||||||| Sbjct 14088 TTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || ||||| ||||| || || || ||| ||||| || |||||||| | Sbjct 14495 CCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 14436 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || ||||| || || || ||||| |||| || || ||||||| || Sbjct 14435 AAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGG 14376 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC- 48718 | ||||||||||| || ||| || ||| | |||| || || | | ||| Sbjct 14375 ATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGA-ACTTTCACA 14317 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||| |||| |||||| || ||||| ||||| Sbjct 14316 TTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 >seq1539 Length=61058 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || ||||| ||||| || || || ||| ||||| || |||||||| | Sbjct 9573 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 9514 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || ||||| || || || ||||| || || || || ||||| || ||| Sbjct 9513 AAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9454 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC-GC-CTCCA 48717 | ||||||||| || | |||||| ||| ||| | | | | || || || ||| | Sbjct 9453 ATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATC--ACTGCTCTCGA 9396 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || |||||||| ||||||||||| |||||||| ||||| Sbjct 9395 CCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 Score = 120 bits (132), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||||||||||||| || ||| ||||||||| |||||||| || | Sbjct 9801 CCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 9742 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || | || || || ||||| || || || || ||||| || ||| Sbjct 9741 AAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9682 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC-GC-CTCCA 48717 | ||||||||| || | |||||| ||| ||| | | | | | | || || ||| | Sbjct 9681 ATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGG--TATCACTGCTCTCGA 9624 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || |||||||| |||| ||||| || ||||| ||||| Sbjct 9623 CCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380470894894575