Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq615 109 1e-18 seq5492 102 2e-16 seq12421 98.7 2e-15 seq2518 98.7 2e-15 seq8845 89.7 1e-12 >seq615 Length=100005 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 || ||||| | || |||||||| || || ||||| | ||| ||||| ||||| ||| Sbjct 5574 TGCGGGTTTAGGATTTGGAAGTCGCCGGATAGCACGCGCCTGCTGTAAATATTTGATGTG 5633 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 || ||||||| | ||||||||| || || || || || ||| || || ||||| || Sbjct 5634 TATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGCATCGGC 5693 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAG 213083 |||||||| |||||||| | ||| ||||||| | | || | | ||| | |||||| Sbjct 5694 GCCACCAGCAGACTGTTGCGCACCCCGTGCTTGGCAATCCGCTCCTTCAGCGCCGCCCAG 5753 Query 213084 TCCCA 213088 ||||| Sbjct 5754 TCCCA 5758 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/152 (76%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 213481 GCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCC-TGAGAGTCTGTGTACTCCATG 213539 ||||||| ||| ||||| ||||||||| || ||| || | | | |||||| ||| Sbjct 7897 GCAGGGCAATGGAGGCCAAGTTGCAAACTGCGGTCTCGGTGGGCGAA-GAGTACTCAATG 7955 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 ||||| |||||||||||| ||| |||||| || |||||||| ||||| ||| ||||| Sbjct 7956 ATCTCAGTGCACAGGTTGGAGCACTTGATGGTCCCGAGGTTCTGCTGGTTCGAC-TTGCG 8014 Query 213600 TTGGCA-GAATCCTTGTAGAGCATGTAGGGGG 213630 | ||| | |||||||| | |||||| |||| Sbjct 8015 GTTGCACGCGTCCTTGTACACCATGTACGGGG 8046 >seq5492 Length=8422 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 || ||||| | || |||||||| || || ||||| | || ||| | |||||| ||| Sbjct 6748 TGCGGGTTTAGAATTTGGAAGTCGCCGGACAGCACGCGTCTGCTGTAGATGTTTGATGTG 6689 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 || ||||||| | ||||||||| || || || || || ||| || || ||||| || Sbjct 6688 TATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGCATCGGC 6629 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCT 213054 || ||||| |||||||| | ||||||||||| Sbjct 6628 GCGACCAGCAGACTGTTGCGCACTCCGTGCT 6598 >seq12421 Length=2797 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 213481 GCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCC-TGAGAGTCTGTGTACTCCATG 213539 ||||||| ||| ||||| |||||| || || ||| || | | | |||||| ||| Sbjct 1193 GCAGGGCAATGGAGGCCAAGTTGCACACTGCGGTCTCGGTGGGCGAA-GAGTACTCGATG 1251 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 ||||| |||||||||||| ||| |||||| || |||||||| ||||| ||| ||||| Sbjct 1252 ATCTCAGTGCACAGGTTGGAGCACTTGATGGTCCCGAGGTTCTGCTGGTTCGAC-TTGCG 1310 Query 213600 TTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 | ||| | |||||||| | ||| || |||| |||||||| Sbjct 1311 GTTGCACGCGTCCTTGTACACCATATATGGGGTGCCGGTCTC 1352 >seq2518 Length=16751 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 213481 GCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCC-TGAGAGTCTGTGTACTCCATG 213539 ||||||| ||| ||||| |||||| || || ||| || | | | |||||| ||| Sbjct 10553 GCAGGGCAATGGAGGCCAAGTTGCACACTGCGGTCTCGGTGGGCGAA-GAGTACTCGATG 10611 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 |||||||||||||||||| ||| |||||| || || ||||| ||||| ||| ||||| Sbjct 10612 ATCTCGGTGCACAGGTTGGAGCACTTGATGGTCCCGAGATTCTGCTGGTTCGAC-TTGCG 10670 Query 213600 TTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 | ||| | |||||||| | |||||| |||| ||||| || Sbjct 10671 GTTGCACGCGTCCTTGTACACCATGTACGGGGTGCCGGTTTC 10712 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 || ||||| | || |||||||| || || ||||| | || ||| | ||| || ||| Sbjct 9549 TGCGGGTTCAGGATTTGGAAGTCGCCGGACAGCACGCGTCTGCTGTAGATGTTGGATGTG 9608 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 || ||||||| | ||||||||| || || || || || || || || ||||| || Sbjct 9609 TATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTTGACGCGGTTGGCATCGGC 9668 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAG 213083 || ||||| |||||||| | ||||||||||| | | || | | ||| | |||||| Sbjct 9669 GCGACCAGCAGACTGTTGCGCACTCCGTGCTTGGCAATCCGCTCCTTCAGCGCCGCCCAG 9728 Query 213084 TCCCA 213088 ||||| Sbjct 9729 TCCCA 9733 >seq8845 Length=2813 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 |||||||||||| | || | | || |||||||||||||| || ||| ||| ||||| Sbjct 2019 GAGACCAGGCATTAGACCGCGTTTCTTCAGCCAGAAAATTGCTGCAAAACTGCCCGAGAA 1960 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| || || || || |||||||| ||| | || |||||||| | ||| | | | Sbjct 1959 GAAAATTCCTTCGACCGCCGCGAATGCGACCAATCTTTCTCCGAATGTAGCCTCATGATT 1900 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATG 48350 || ||||| | ||||| |||||||| ||||||| | ||| Sbjct 1899 GGAAATCCAACGTAATGCCCAATCTGCCTTTTTCTTGACGAATG 1856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930362270816000