Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5492 104 4e-17 seq2518 104 4e-17 seq615 102 2e-16 seq12421 95.1 2e-14 >seq5492 Length=8422 Score = 104 bits (114), Expect = 4e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 221098 CACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTA 221157 |||||| | || ||| ||| | | |||||| || || || ||||| | || ||| Sbjct 6761 CACCTTCATCAAATGCGGGTTTAGAATTTGGAAGTCGCCGGACAGCACGCGTCTGCTGTA 6702 Query 221158 CAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGC 221217 | ||| || ||| | || |||| | |||||||||||| ||||| || |||||| || Sbjct 6701 GATGTTTGATGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGC 6642 Query 221218 GGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 ||| ||||| || || ||||||||||||||||||| |||| Sbjct 6641 GGTCGGCATCGGCGCGACCAGCAGACTGTTGCGCACTCCG 6602 >seq2518 Length=16751 Score = 104 bits (114), Expect = 4e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 221098 CACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTA 221157 |||||| | || ||| ||||| | |||||| || || || ||||| | || ||| Sbjct 9536 CACCTTCATCAAATGCGGGTTCAGGATTTGGAAGTCGCCGGACAGCACGCGTCTGCTGTA 9595 Query 221158 CAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGC 221217 | ||| || ||| | || |||| | |||||||||||| ||||| || ||||| || Sbjct 9596 GATGTTGGATGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTTGACGC 9655 Query 221218 GGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 ||| ||||| || || ||||||||||||||||||| |||| Sbjct 9656 GGTTGGCATCGGCGCGACCAGCAGACTGTTGCGCACTCCG 9695 >seq615 Length=100005 Score = 102 bits (112), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 221099 ACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTAC 221158 ||||| | || ||| ||| | | |||||| || || || ||||| | ||| ||| Sbjct 5562 ACCTTCATCAAATGCGGGTTTAGGATTTGGAAGTCGCCGGATAGCACGCGCCTGCTGTAA 5621 Query 221159 AGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCG 221218 | || || ||| | || |||| | |||||||||||| ||||| || |||||| ||| Sbjct 5622 ATATTTGATGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCG 5681 Query 221219 GTGGGCATGGGTGCCACCAGCAGACTGTTGCGCA 221252 || ||||| || |||||||||||||||||||||| Sbjct 5682 GTCGGCATCGGCGCCACCAGCAGACTGTTGCGCA 5715 >seq12421 Length=2797 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 221098 CACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTA 221157 |||||| | || ||| ||| | | |||||| || || || ||||| | || ||| Sbjct 105 CACCTTCATCAAATGCGGGTTTAGGATTTGGAAGTCGCCAGACAGCACGCGTCTGCTGTA 164 Query 221158 CAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGC 221217 | ||| || ||| | || || | | |||||||||||| ||||| || |||||| || Sbjct 165 GATGTTGGATGTGTATGGCTCAAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGC 224 Query 221218 GGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCA 221252 ||| ||||| || || ||||||||||||||||||| Sbjct 225 GGTCGGCATCGGCGCAACCAGCAGACTGTTGCGCA 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927677648456000