Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2970 105 4e-17 seq3991 102 5e-16 seq1539 100 2e-15 seq27157 98.7 6e-15 seq4791 96.9 2e-14 seq2297 95.1 8e-14 seq1426 93.3 3e-13 seq10127 89.7 3e-12 seq6138 86.0 4e-11 >seq2970 Length=24236 Score = 105 bits (116), Expect = 4e-17 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || | ||||| | |||||| ||||| ||||| ||||| || || |||||| Sbjct 8051 TTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGT 7992 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||||| ||||| ||||||||||| |||||| ||| | | ||||| || ||| Sbjct 7991 TGATCAGTCGGAATACCTTCCTTGTCAGTGATCTTTGCTTTAATATTATCAATTGTGTCA 7932 Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | | || ||||| || ||||| ||||| | ||| || || |||||||| Sbjct 7931 GTACTCTCGA-CCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTG 7876 Score = 100 bits (110), Expect = 2e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| |||| ||| | | |||||| ||||| || || ||||| || || |||||| Sbjct 7823 TTGTAATCGGCTAAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGT 7764 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||||| || || || |||||||| |||||| ||| ||| ||||| |||||| Sbjct 7763 TGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCA 7704 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | | | ||| ||| || ||||| ||||| | ||| || || |||||||| Sbjct 7703 CTGCTCTCGACCTCCAA-GGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTG 7648 Score = 100 bits (110), Expect = 2e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || | ||||| | |||||| ||||| || || ||||| || || |||||| Sbjct 8279 TTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGT 8220 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||||| || || || |||||||| |||||| ||| ||| ||||| |||||| Sbjct 8219 TGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCA 8160 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | | | ||| ||| || ||||| ||||| | ||| || || |||||||| Sbjct 8159 CTGCTCTCGACCTCCAA-GGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTG 8104 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || | ||| | | |||||| | ||| ||||| ||||| || | |||||| Sbjct 14447 TTGTAATCGGCCAAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGC 14388 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || || || || |||||||| || || ||| || ||| || | |||||| Sbjct 14387 TGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCC 14328 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||| ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 14327 GAACTTTCACATTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTG 14272 >seq3991 Length=17808 Score = 102 bits (112), Expect = 5e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || | ||||| | |||||| | ||| ||||| |||||||| || ||||| Sbjct 11882 TTGTAATCGGCCAAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGC 11941 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || || || |||||||| || || || || ||| || | ||||||| Sbjct 11942 TGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTATCA 12001 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||| ||||| |||||||| || || ||||| || ||||||||||| Sbjct 12002 GAACTTTCACATTCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTG 12057 Score = 89.7 bits (98), Expect = 3e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| || || || | ||| | | |||||| ||||| || || ||||| || || ||||| Sbjct 17305 ATTGTAGTCGGCCAAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTG 17364 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||||| || || || ||||| || |||||| ||| ||| ||||| ||||| Sbjct 17365 TTGATCAGTCGGTATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATC 17424 Query 480713 AGTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | | | | ||| ||| || ||||| ||||| | ||| || || |||||||| Sbjct 17425 ACTGCTCTCGACCTCCAA-GGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTG 17481 >seq1539 Length=61058 Score = 100 bits (110), Expect = 2e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || | ||| | | |||||| ||||| ||||| ||||| || || ||||| Sbjct 9297 TTGTAATCGGCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGC 9238 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||||| ||||| || ||||| || |||||| ||| ||| ||||| |||||| Sbjct 9237 TGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCA 9178 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | | | || |||| || ||||| ||||| || || || ||||||||||| Sbjct 9177 CTGCTCTCGACCTCCA-GGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTG 9122 Score = 93.3 bits (102), Expect = 3e-13 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| || || || | ||| | | |||||| ||||| ||||| ||||| || || ||||| Sbjct 9754 ATTGTAGTCGGCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTG 9695 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||| ||||| || ||||| || |||||| ||| ||| ||||| ||||| Sbjct 9694 CTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATC 9635 Query 480713 AGTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | | | | || | || || ||||| ||||| || || || ||||||||||| Sbjct 9634 ACTGCTCTCGACCTCCA-GAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTG 9578 >seq27157 Length=1261 Score = 98.7 bits (108), Expect = 6e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 480645 AGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCA 480704 |||||||| ||||| |||||||| ||||||||||| |||||||| |||||| |||| Sbjct 879 AGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCA 820 Query 480705 ATAGTATCAGTGTG-TGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 || || || || | || || ||||| |||| || || |||||||||||||| || || Sbjct 819 ATCGTGTCGCTGGCCTCAACTTCCAAGG-TAATGGTCTTGCCGGTGAGAGTCTTGACAAA 761 Query 480764 AATTTG 480769 ||||| Sbjct 760 GATTTG 755 >seq4791 Length=9937 Score = 96.9 bits (106), Expect = 2e-14 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 474668 ATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA 474726 ||||| || |||||| | |||||||||| || || || ||| | || || || || Sbjct 6594 ATTTCGTCCATGGTTCTGACCAAAATGAAGCAGACTGCTGAGG-CGTACCTGGGCCACCC 6652 Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 || || ||||| | || ||||| || ||||| || || ||||||||||| || Sbjct 6653 TGTCCGCGACGCAGTTGTCACAGTTCCTGCGTATTTCAACGACGGCCAACGTCAAGCGAC 6712 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 || |||||||| ||||| || || || || || || || || || || ||||| || Sbjct 6713 CAAGGATGCGGGTGCCATTGCGGGACTGAACGTGTTGCGCATCATCAACGAGCCAACCGC 6772 Query 474847 AGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||| ||||| || ||||| || || ||||| Sbjct 6773 AGCTGCACTCGCCTATGGACTGGACAAGAA 6802 >seq2297 Length=32998 Score = 95.1 bits (104), Expect = 8e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 480647 ACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAAT 480706 |||||| ||||| |||||||| ||||||||||| |||||||| |||||| |||||| Sbjct 3040 ACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCAAT 2981 Query 480707 AGTATCAGTGTG-TGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAA 480765 || || || | || || ||||| |||| || || |||||||||||||| || || | Sbjct 2980 CGTGTCGCTGGCCTCAACTTCCAAGG-TAATGGTCTTGCCGGTGAGAGTCTTGACAAAGA 2922 Query 480766 TTTG 480769 |||| Sbjct 2921 TTTG 2918 >seq1426 Length=29504 Score = 93.3 bits (102), Expect = 3e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 474668 ATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA 474727 || || || |||||| | | |||||||| ||||| ||| |||| || || || Sbjct 17063 ATCTCGTCCATGGTTCTGACAAAAATGAAGCAAACTGCGGAGGCATACCTGGGCCACCCC 17004 Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || || ||||| | || ||||| || ||||| || || |||||||| || || Sbjct 17003 GTCCGCGACGCAGTTGTCACGGTTCCCGCGTATTTCAACGACGGCCAACGTCAGGCGACC 16944 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 || || ||||| || || || || || || || || ||||| ||||||||||| || Sbjct 16943 AAGGACGCGGGTGCCATCGCGGGACTGAACGTGTTGCGCATTATCAATGAACCAACCGCG 16884 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||||||| || || || || || ||||| Sbjct 16883 GCCGCACTCGCCTACGGACTGGACAAGAA 16855 >seq10127 Length=4212 Score = 89.7 bits (98), Expect = 3e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 474668 ATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA 474727 || || || |||||| | |||| ||||| || |||||| | || || || || Sbjct 894 ATCTCGTCCATGGTTCTGACCAAGATGAAGCAGACCGCGGAGGCGTACCTGGGCCACCCT 835 Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || || ||||| | || ||||| || ||||| || || |||||||||||||| Sbjct 834 GTCCGCGACGCAGTTGTCACGGTTCCTGCGTATTTCAACGACGGCCAACGTCAAGCAACC 775 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 || || ||||| || || || || || || || || || || || || ||||| ||| Sbjct 774 AAGGACGCGGGTGCCATCGCGGGACTGAACGTGTTGCGCATCATCAACGAGCCAACCGCA 715 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || ||||| || ||||| || || ||||| Sbjct 714 GCTGCACTCGCCTATGGACTGGACAAGAA 686 >seq6138 Length=12267 Score = 86.0 bits (94), Expect = 4e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 480645 AGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCA 480704 ||||| || ||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 9202 AGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCG 9261 Query 480705 ATAGTATCA-GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 || || ||| || | | ||||| || || || || || |||||||| || ||||| Sbjct 9262 ATGGTGTCACTTGCCTCGA-CCTCAAGAGTTATGGTCTTGCCAGTGAGAGTTTTGACGAA 9320 Query 480764 AATTTG 480769 |||||| Sbjct 9321 AATTTG 9326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3263867195002700