Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq52 86.0 7e-12 >seq52 Length=196430 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 175294 GGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCG 175353 || |||||||| | || || || || ||||||||||| | ||| ||| | ||| Sbjct 167927 GGTGCCCTTCTGACCGGCCCACCCGGGACTGGAAAGACCCTGTTGGCCAAAGCGACCGCT 167986 Query 175354 GGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGT 175412 || || | ||||| ||||||||| |||| ||| | | | | ||| |||| |||||||| Sbjct 167987 GGCGAGGCCAATGTTCCATTCATCACAGT-CTCCGGCTCCGAGTTTCTGGAAATGTTTGT 168045 Query 175413 TGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATG 175472 || |||||| | | |||| || || | || || || || ||| |||| || || Sbjct 168046 GGGCGTGGGTCCGAGTCGGGTCCGGGACATGTTCGAGATGGCGCGCAAAAAGGCCCCTTG 168105 Query 175473 TATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAA-CGCAGCG 175519 || | ||||| || || || || |||||||| | |||| ||| ||| Sbjct 168106 CATCTTGTTCATCGACGAAATCGACGCGGTGGG-ACGCAAGCGCGGCG 168152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595819973012000