Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3991 96.9 6e-15 seq2970 87.8 3e-12 >seq3991 Length=17808 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || |||| || |||| ||| || ||||||||||| |||||||| | | Sbjct 11879 ATGTTGTAATCGGCCAAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGT 11938 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || || || || || || || ||||| | || | ||| | |||| Sbjct 11939 TGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTA 11998 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||| ||| |||||| ||||||||||| || || || |||||||| || |||||| Sbjct 11999 TCAGAACTTTCACATTCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGC 12058 Query 193359 ATT 193361 ||| Sbjct 12059 ATT 12061 >seq2970 Length=24236 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| || || | ||| || ||||||||||| |||||||| | | Sbjct 14222 ATGTTGTAGTCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGT 14163 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || || || || || || || ||||| | || | ||| | |||| Sbjct 14162 TGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTA 14103 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||| ||| ||| || ||||| ||||| || || || ||||| ||||| || ||| Sbjct 14102 TCCGAACTTTCACATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGC 14043 Query 193359 ATT 193361 ||| Sbjct 14042 ATT 14040 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||||||||| ||||| || || | || ||||| || || || || || || Sbjct 14424 ATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTT 14365 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | || | ||| | |||||| ||| ||| ||| || ||||| Sbjct 14364 GTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTAT 14305 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || ||||| || || ||||||||| Sbjct 14304 GGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCATT 14268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898523928018000