Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2970 98.7 2e-15 seq3991 91.5 3e-13 >seq2970 Length=24236 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| |||||||| || || || || || | || | ||| || ||| || ||||| | Sbjct 14496 ACCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGC 14437 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| ||||||||||| || |||||||| || | || ||||| ||||| Sbjct 14436 CAAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGG 14377 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || || || ||||| || ||||| || || ||| || ||| Sbjct 14376 GATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACA 14317 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| || || |||||||| || || | ||||| | || || |||||| Sbjct 14316 TTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCATT 14268 >seq3991 Length=17808 Score = 91.5 bits (100), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || || || || || ||||| | || |||||||| |||||| || || Sbjct 17027 ATTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCG 17086 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| ||||||||||| || |||||||| | | || ||||||| | Sbjct 17087 GCCAAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTT 17146 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC-GAT-T 192484 || || || || ||||| || || ||| |||||| || | ||| || | | | Sbjct 17147 GGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATC--ACTGCTCT 17204 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || | || |||||||| || || || ||||| | ||| || |||||| Sbjct 17205 CGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983212012833750