Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2970 89.7 9e-13 seq3991 87.8 3e-12 >seq2970 Length=24236 Score = 89.7 bits (98), Expect = 9e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||||||| || || || || || | || | ||| || || || ||||| | Sbjct 14496 ACCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGC 14437 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || ||||||||||| || ||||| || || | || || || ||||| Sbjct 14436 CAAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGG 14377 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || || || ||||| || ||||| || |||||| || ||| Sbjct 14376 GATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACA 14317 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||| || || |||||||| || || | ||||| | ||| || |||||| Sbjct 14316 TTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCATT 14268 >seq3991 Length=17808 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| | |||| ||| | || ||||||||||| || |||||||| | | Sbjct 11879 ATGTTGTAATCGGCCAAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGT 11938 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| || || || || || || || || ||||| || ||||| || |||| Sbjct 11939 TGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTA 11998 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| |||||| || || ||||| ||||| | ||||| | ||| || ||| Sbjct 11999 TCAGAACTTTCACATTCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGC 12058 Query 172068 ATT 172070 ||| Sbjct 12059 ATT 12061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903998640045000