Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2970 122 8e-23 seq3991 113 4e-20 seq12421 89.7 5e-13 seq615 89.7 5e-13 >seq2970 Length=24236 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || ||||| ||||| || || || ||| ||| | Sbjct 14269 ATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTCG 14328 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || ||||| | || || ||| ||||| ||||| || || || || || ||||| Sbjct 14329 GATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCAG 14388 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || ||||| |||| ||| | | || | ||||| ||| Sbjct 14389 CAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACAAC 14448 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 || |||||||| || || || |||||||| ||||| | | ||||| |||| Sbjct 14449 ATCCAAAAGGAGTCAACCCTCCACTTGGTTTTGCGCCTTAGAGGAGGTGGAA 14500 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | ||||| ||||| || || || || || || || Sbjct 7873 ATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTACT 7932 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | | ||| ||||||| ||||| ||||| || || | |||||| Sbjct 7933 GACACAATTGATAATATTAAAGCAAAGATCACTGACAAGGAAGGTATTCCGACTGATCAA 7992 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||||| || ||||| || || ||| ||| || | ||||| ||| Sbjct 7993 CAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAAC 8052 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| | || || |||||||| ||||| Sbjct 8053 ATCCAAAAGGAGGCAACCCTCCACTTGGTTTTGCG 8087 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | ||||| ||||| || || | || || || || Sbjct 8101 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 8160 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||||| ||||| || || ||||| | |||||| Sbjct 8161 GATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCAA 8220 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||||| |||||||| || || ||| ||| || | ||||| ||| Sbjct 8221 CAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAAC 8280 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| | || || |||||||| ||||| Sbjct 8281 ATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 8315 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | ||||| ||||| || || | || || || || Sbjct 7645 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 7704 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||||| ||||| || || ||||| | |||||| Sbjct 7705 GATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCAA 7764 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||||| |||||||| || || ||| | | | | ||||| ||| Sbjct 7765 CAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTACAAC 7824 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || ||||| || | || || || ||||| ||||| Sbjct 7825 ATCCAAAAAGAGGCAACCCTTCATTTGGTTTTGCG 7859 >seq3991 Length=17808 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| ||||| || ||||| || || | ||| ||| | Sbjct 12288 ATGCAGATTTTTGTGAAAACCCTAACGGGAAAAACCATAACCTTGGAATGCGAAAGTTCT 12229 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || ||||| | || || || ||||| ||||| || || || || || || ||| Sbjct 12228 GATACCGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCACCGGACCAA 12169 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| ||||| || ||||| || |||||| | | || | ||||| ||| Sbjct 12168 CAACGGTTGATTTTTGCAGGAAAACAACTCGAGGATGGTCGTACTTTGGCCGATTACAAC 12109 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| || || || || ||||||||||| Sbjct 12108 ATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCG 12074 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | ||||| ||||| || || | || || || || Sbjct 17484 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 17425 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||||| || || || || ||||| | |||||| Sbjct 17424 GATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATACCGACTGATCAA 17365 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||||| |||||||| || || ||| | | || | || || || Sbjct 17364 CAACGCCTGATCTTTGCGGGGAAACAACTAGAAGATGGCCGCACTTTGGCCGACTACAAT 17305 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || ||||| || | || || || ||||| ||||| Sbjct 17304 ATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCG 17270 >seq12421 Length=2797 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||| | |||||||| || |||||||| || || || || ||||||| Sbjct 162 GTAGATGTTGGATGTGTATGGCTCAAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGA 221 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTG---ATTCG 138656 |||||||||||| ||| |||| ||| || || | |||| ||||| || || Sbjct 222 CGCGGTCGGCATCGGCGCAACCAGCAGACTGTTGCGCACCCCGT---GCTTGGCAATCCG 278 Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 ||||| | || || ||||||||||| |||| Sbjct 279 CTCCTTCATCGCCGCCCAGTCCCACAGATCG 309 >seq615 Length=100005 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 |||||| || ||| | ||||| || || |||||||| || || || || ||||||| Sbjct 5618 GTAAATATTTGATGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGA 5677 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTG---ATTCG 138656 |||||||||||| |||||||| ||| || || | |||| ||||| || || Sbjct 5678 CGCGGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACCCCGT---GCTTGGCAATCCG 5734 Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 ||||| |||| || ||||||||||| |||| Sbjct 5735 CTCCTTCAGCGCCGCCCAGTCCCACAGATCG 5765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449332275547000