Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq97 116 3e-21 seq2970 100 2e-16 seq3991 86.0 5e-12 seq1539 82.4 6e-11 >seq97 Length=193695 Score = 116 bits (128), Expect = 3e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 |||||| | |||||||||||| ||| |||||| ||||||||||||| || ||||| Sbjct 112719 GGACGTGACAACGCCTTGGCGATATCGTTCATGTTCGCGATGACAGTCTTTATACCGTTT 112660 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 ||||| ||||| ||||| || | || |||||||| |||||||| ||||||| ||| | Sbjct 112659 CCCTTGCCTTCAACCTTTGCCAAAATTCGCGGCATCTTGTAGCGATAGAACGGGTCTTGC 112600 Query 34615 ACATTGCGGTTAACGTT 34631 || ||||||||||| Sbjct 112599 ACCCCACGGTTAACGTT 112583 >seq2970 Length=24236 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| |||||||| ||||| |||||||| ||| | || ||| Sbjct 8100 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 8159 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| ||||| | ||||| || ||| | || ||||| Sbjct 8160 TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCA 8219 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | || || | |||||| ||||| || || |||| | |||| |||| |||||||| Sbjct 8220 ACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAA 8279 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||| ||||| || | || | ||| |||| || Sbjct 8280 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTT 8312 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| |||||||| ||||| |||||||| ||| | || ||| Sbjct 7644 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 7703 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| ||||| | ||||| || ||| | || ||||| Sbjct 7704 TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCA 7763 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | || || | |||||| ||||| || || |||| | | || | || |||||||| Sbjct 7764 ACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTACAA 7823 Query 110452 CATTCAAAAAGA 110463 ||| |||||||| Sbjct 7824 CATCCAAAAAGA 7835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| ||||| | ||||| |||||||| ||| | ||| || | Sbjct 14040 AATGCAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTC 14099 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||||| | | | || || || || ||||| || || | || |||||| Sbjct 14100 GGATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCA 14159 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || |||| ||| || ||||| |||| |||| | | || |||| || ||||| Sbjct 14160 GCAACGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTACAA 14219 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| ||||||||||| || | ||| |||| Sbjct 14220 CATCCAAAAAGAATCAACCCTCCACTTGGT 14249 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || |||||| | ||||| |||||||| ||| | ||| || | Sbjct 14268 AATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTC 14327 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||||| | | | || || || || ||||| || || | || |||||| Sbjct 14328 GGATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCA 14387 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | ||| || ||||| |||| |||| | | || |||| |||||||| Sbjct 14388 GCAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACAA 14447 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||| ||||| || || || | ||| |||| || Sbjct 14448 CATCCAAAAGGAGTCAACCCTCCACTTGGTTTT 14480 >seq3991 Length=17808 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || |||||| | || || ||||| || ||| | ||| || | Sbjct 12061 AATGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGTGAAAGTTC 12002 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||||| | | | || || ||| || ||||| || || | || ||| || Sbjct 12001 TGATACTGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCA 11942 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || |||| ||| || ||||| |||| |||| | |||| |||| |||||||| Sbjct 11941 GCAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTACAA 11882 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| ||||| || || || | ||| |||| Sbjct 11881 CATCCAAAAGGAGTCAACCCTCCACTTGGT 11852 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| ||||| |||| || |||||||| ||| | ||| || | Sbjct 12289 AATGCAGATTTTTGTGAAAACCCTAACGGGAAAAACCATAACCTTGGAATGCGAAAGTTC 12230 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| || | | | || || ||| || ||||| || || | || ||| || Sbjct 12229 TGATACCGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCACCGGACCA 12170 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | | |||| ||| || ||||| || ||||||| | || |||| |||||||| Sbjct 12169 ACAACGGTTGATTTTTGCAGGAAAACAACTCGAGGATGGTCGTACTTTGGCCGATTACAA 12110 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||| ||||| || || || | || ||||||| Sbjct 12109 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTT 12077 >seq1539 Length=61058 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| |||||||| ||||| |||||||| ||| | || ||| Sbjct 9346 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 9405 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| ||||| | || || || ||| | || ||||| Sbjct 9406 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 9465 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || || | ||| || ||||| |||| |||| | | || |||| |||||||| Sbjct 9466 GCAACGCCTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTACAA 9525 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||| ||||| || | || | ||| |||| || Sbjct 9526 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTT 9558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412335807758825