Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq10184 107 1e-18 seq2067 107 1e-18 seq8832 104 2e-17 seq2970 98.7 6e-16 seq3991 82.4 5e-11 >seq10184 Length=3342 Score = 107 bits (118), Expect = 1e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 34792 CTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAG 34851 ||||||||| ||||| | ||| |||| | || |||||||| || ||||||||||| || Sbjct 787 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAG 846 Query 34852 TCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTAT 34911 ||| |||||||| |||| | || |||||||| | || || || ||| | | Sbjct 847 TCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCAC 906 Query 34912 CGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGAT 34971 || || || | ||| ||||| | ||| || ||||| || || || ||||| || ||||| Sbjct 907 CGTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGAT 966 Query 34972 CTGCATG 34978 |||||| Sbjct 967 TTGCATG 973 >seq2067 Length=34267 Score = 107 bits (118), Expect = 1e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 34792 CTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAG 34851 ||||||||| ||||| | ||| |||| | || |||||||| || ||||||||||| || Sbjct 29579 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAG 29638 Query 34852 TCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTAT 34911 ||| |||||||| |||| | ||||||||||| | || || || ||| | | Sbjct 29639 TCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCAC 29698 Query 34912 CGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGAT 34971 | || || | ||| ||||| | ||| || ||||| || || || ||||| || ||||| Sbjct 29699 TGTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGAT 29758 Query 34972 CTGCATG 34978 |||||| Sbjct 29759 TTGCATG 29765 >seq8832 Length=4481 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 34792 CTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAG 34851 ||||||||| ||||| | ||| |||| |||| |||||||| || ||||||||||| || Sbjct 601 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAG 660 Query 34852 TCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTAT 34911 |||||||||||| |||| | |||||||| || | || || || ||| | | Sbjct 661 TCGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCAC 720 Query 34912 CGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGAT 34971 || || || | ||| | || | || || ||||| || || || ||||| || ||||| Sbjct 721 CGTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGAT 780 Query 34972 CTGCATG 34978 |||||| Sbjct 781 TTGCATG 787 >seq2970 Length=24236 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||||||||| | | || |||| |||| ||| ||| || || ||||| || || | Sbjct 7873 TTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGG 7814 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || |||| |||| || ||||| || || || |||||||| ||||| || || || Sbjct 7813 CTAAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 7754 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCC 34924 | | ||||||||||| | || ||| ||| || || |||| || ||| || | Sbjct 7753 GTATGCCCTCCTTGTCAGTGATCTTTGCTTTCAC--AT--TATCAATGGTATCACTGCTC 7698 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||||||| ||||| || | || || ||||| || ||||| Sbjct 7697 TCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||||||||| | | || |||| ||||| ||| |||||| || ||||| || || | Sbjct 8329 TTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGG 8270 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | || |||| || ||||| || || || |||||||| ||||| || || || Sbjct 8269 CCAAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 8210 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCC 34924 | | ||||||||||| | || ||| ||| || || |||| || ||| || | Sbjct 8209 GTATGCCCTCCTTGTCAGTGATCTTTGCTTTCAC--AT--TATCAATGGTATCACTGCTC 8154 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||||||| ||||| || | || || ||||| || ||||| Sbjct 8153 TCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 >seq3991 Length=17808 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | | ||| |||| ||| | ||| |||||| || ||||| || || | Sbjct 11834 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 11893 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || |||| |||| ||| ||||| || || ||||| ||||||||||| |||| Sbjct 11894 AAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGG 11953 Query 34871 ACCCCCTCCTTGTCGTTTATTTT 34893 | ||||||||||| | ||||| Sbjct 11954 ATACCCTCCTTGTCCTGGATTTT 11976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325293777974975