Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3991 84.2 3e-11 >seq3991 Length=17808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGA-TGTAGAACATAAC 146090 ||||||| ||| ||||||| | || |||||||| || || | || ||| ||| | Sbjct 12059 TGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGT-GAAAGTTCT 12001 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 |||||| | | ||||| || ||||| || || || || || || || || || Sbjct 12000 GATACTGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCAG 11941 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | || ||||||||||| |||||||| || ||| |||| || | ||||| || Sbjct 11940 CAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTACAAC 11881 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || ||||| || || || |||| || || | || | || |||||| Sbjct 11880 ATCCAAAAGGAGTCAACCCTCCACTTGGTTCTGCGCCTCAGGGGAGGT 11833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785178532783000