Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3991 145 1e-29 seq2970 141 2e-28 seq1539 132 9e-26 seq27157 105 1e-17 seq2297 105 1e-17 seq9051 96.9 7e-15 seq6138 89.7 1e-12 seq92520 86.0 1e-11 >seq3991 Length=17808 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||| ||| || || || || | ||||| || ||||| || || | Sbjct 17258 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 17317 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || |||||||||||||| || |||||||| || | ||||||||| | ||| Sbjct 17318 AAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 17377 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| ||||||||||| ||||| ||||| |||||| | || || Sbjct 17378 ATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACC 17437 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct 17438 TCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17485 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||| ||| || || || || | ||||| || ||||| || || | Sbjct 17030 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 17089 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| | |||||| || |||||||| || | ||| ||||| | || Sbjct 17090 AAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGA 17149 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| ||||||||||| ||||| ||||| |||||| | || || Sbjct 17150 ATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACC 17209 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct 17210 TCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17257 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||| || || || || || || || || || || || ||||| | Sbjct 12062 CCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 12121 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||| || || ||||||||||| ||||| || | | |||||| || || || Sbjct 12122 AAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGG 12181 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || || || || || ||||| || | |||||| | ||| | Sbjct 12182 ATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCAT 12241 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||| || || || || | || || ||||| ||||||||| Sbjct 12242 TCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCATT 12289 >seq2970 Length=24236 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||| ||| || || || || | ||||| || || || ||||| | | Sbjct 7871 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCT 7812 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| |||||||| || |||||||| || | ||||||||| | ||| Sbjct 7811 AAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 7752 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || ||||||||||| ||||| ||||| |||||| | || || Sbjct 7751 ATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACC 7692 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct 7691 TCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 7644 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||| ||| ||||| || || | || || || || || ||||| | Sbjct 8327 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 8268 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | ||| || ||||| |||||||| || |||||||| || | ||||||||| | ||| Sbjct 8267 AAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 8208 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || ||||||||||| ||||| ||||| |||||| | || || Sbjct 8207 ATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACC 8148 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct 8147 TCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 8100 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||| ||| ||||| || || | || || || || || ||||| | Sbjct 8099 CCTCCCCTGAGGCGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 8040 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | ||| || ||||| ||||||||||| |||||||| || | ||||||||| | || Sbjct 8039 AAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGA 7980 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || ||||||||||| | ||| ||||| || ||| || || || Sbjct 7979 ATACCTTCCTTGTCAGTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACC 7920 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||||| || || || ||||| || || ||||| || |||||| Sbjct 7919 TCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCATT 7872 >seq1539 Length=61058 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||| ||| ||||| || || | || || || || || ||||| | Sbjct 9573 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 9514 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| | ||||||||| |||||||| || | ||| ||||| | || Sbjct 9513 AAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9454 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| ||||||||||| ||||| ||||| |||||| | || || Sbjct 9453 ATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACC 9394 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||| || || || ||||| || || ||||| || |||||| Sbjct 9393 TCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 9346 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||| ||| ||||| || || | || || || || || ||||| | Sbjct 9345 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 9286 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| ||||||||||| |||||||| || | ||| ||||| | || Sbjct 9285 AAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9226 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| ||||||||||| ||||| ||||| |||||| | || || Sbjct 9225 ATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACC 9166 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||||| || || || |||| || || || || || |||||| Sbjct 9165 TCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9118 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||| || || || || || | ||||| || ||||| || || | Sbjct 9801 CCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 9742 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| ||||||||||| |||||||| || | ||| ||||| | || Sbjct 9741 AAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGA 9682 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| ||||||||||| ||||| ||||| |||||| | || || Sbjct 9681 ATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACC 9622 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| |||||| || || || |||| || || || || || |||||| Sbjct 9621 TCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9574 >seq27157 Length=1261 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 ||| ||||| ||||| || |||||||| || |||||||| || || |||||||||||||| Sbjct 874 TTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCAATCGT 815 Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || | | || |||||||| || || |||||||| || | ||||| ||||| || || Sbjct 814 GTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTG 755 Query 82808 CAT 82810 ||| Sbjct 754 CAT 752 >seq2297 Length=32998 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 ||| ||||| ||||| || |||||||| || |||||||| || || |||||||||||||| Sbjct 3037 TTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCAATCGT 2978 Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || | | || |||||||| || || |||||||| || | ||||| ||||| || || Sbjct 2977 GTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTG 2918 Query 82808 CAT 82810 ||| Sbjct 2917 CAT 2915 >seq9051 Length=5414 Score = 96.9 bits (106), Expect = 7e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || ||||| || || || || ||||||||||| ||||| || || ||||| || || || Sbjct 3791 TGCTGATCCGGCGGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTG 3850 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | | || || |||| ||| ||||||||||| |||| ||||| || || |||||| Sbjct 3851 TCACTGGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTCAGTGTCTTGACGAAAATCTGC 3910 Query 82809 ATT 82811 ||| Sbjct 3911 ATT 3913 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || |||||||| || ||||||||||| ||||||||||| || || || ||||| || || Sbjct 4641 TGCTGATCTGGCGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATGGTG 4700 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | | || ||||| | ||| || |||||||| || | || || || || || ||| Sbjct 4701 TCACTTGCCTCGACTTCAAGAGTGATGGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGC 4760 Query 82809 ATTATTAT 82816 || || || Sbjct 4761 ATGATGAT 4768 >seq6138 Length=12267 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || ||||| ||||| ||||||||||| ||||||||||| || || || ||||| || || Sbjct 9208 TGCTGATCCGGAGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCGATGGTG 9267 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | | || || || | |||||| |||||||| || | || || || || || ||| Sbjct 9268 TCACTTGCCTCGACCTCAAGAGTTATGGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGC 9327 Query 82809 AT 82810 || Sbjct 9328 AT 9329 >seq92520 Length=532 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || || ||||| ||||||||||| || || ||||| || || ||||| || || || Sbjct 30 TGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTG 89 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || ||| || ||||||||||| || ||||| || |||| || || || || || ||| Sbjct 90 TCGCTAGCCTCGACTTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTGACGAAGATTTGC 149 Query 82809 ATTAT 82813 || || Sbjct 150 ATGAT 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980562629577975