Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10184 129 6e-25 seq2067 120 3e-22 seq6138 109 5e-19 seq2518 98.7 1e-15 seq615 98.7 1e-15 seq2970 96.9 3e-15 seq92520 89.7 5e-13 seq5492 89.7 5e-13 seq27157 87.8 2e-12 seq2297 87.8 2e-12 seq22 86.0 6e-12 seq12421 84.2 2e-11 seq9051 82.4 7e-11 seq3991 82.4 7e-11 >seq10184 Length=3342 Score = 129 bits (142), Expect = 6e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 133475 CTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATGAG 133534 ||| || ||||| ||| ||| ||| |||||| || || ||||| ||| | || || Sbjct 787 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAG 846 Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 ||||||||||| || ||||||||||||||||| |||||| ||| | | ||| || Sbjct 847 TCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCAC 906 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 ||||||| | | |||||| || | ||||| || || |||||||| || || ||||| || Sbjct 907 CGTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGAT 966 Query 133655 CTGCATGGC 133663 |||||||| Sbjct 967 TTGCATGGC 975 >seq2067 Length=34267 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 133475 CTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATGAG 133534 ||| || ||||| ||| ||| ||| |||||| || || ||||| ||| | ||||| Sbjct 29579 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAG 29638 Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 ||||||||||| || |||||||| |||||||| |||||| ||| | | ||| || Sbjct 29639 TCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCAC 29698 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 || ||| | | |||||| || | ||||| || || |||||||| || || ||||| || Sbjct 29699 TGTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGAT 29758 Query 133655 CTGCATGGC 133663 |||||||| Sbjct 29759 TTGCATGGC 29767 >seq6138 Length=12267 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 || ||||| || || || ||||||||||| ||||| |||||| ||||| | |||| Sbjct 8469 AGGCGCTGTTGATCCGGCGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCA 8528 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 | |||||| ||| ||| || || | |||| ||||||||| ||||||||||| |||||| Sbjct 8529 ATGGTGTCGCTGGCCTCGACCTCCAGAGTGATGGTTTTGCCTGTCAGAGTTTTGACGAAA 8588 Query 133653 ATCTGCAT 133660 |||||||| Sbjct 8589 ATCTGCAT 8596 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 |||||||| || || ||||||||||| ||||| |||||| ||||| | ||||| Sbjct 8929 CGCTGCTGATCAGGCGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCAATG 8988 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 |||||| | | ||| || || | |||| ||| || ||||||| ||| || ||||| ||| Sbjct 8989 GTGTCGCTAGCCTCGACCTCCAGAGTGATGGTCTTCCCGGTCAAAGTCTTGACGAAGATC 9048 Query 133656 TGCAT 133660 ||||| Sbjct 9049 TGCAT 9053 >seq2518 Length=16751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 148810 ATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACT 148869 |||| | || ||| || ||||| | |||||||| || ||||| || | ||||| Sbjct 10547 ATCGCTGCAGGGCAATGGAGGCCAAGTTGCACACTGCGGTCTCGGTGGGCGAAGAGTACT 10606 Query 148870 CTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCT 148929 | | |||||||| |||||| ||| ||| ||||| || | |||| || || || Sbjct 10607 CGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTCCCGAGATTCTGCTGGTTCGACT 10666 Query 148930 TGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||| |||||||||||||||||||| ||||||||| ||| ||||| ||||| Sbjct 10667 TGCGGTTGCACGCGTCCTTGTACACCATGTACGGGGTGCCGGTTTCGGTCTGCG 10720 >seq615 Length=100005 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 148810 ATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACT 148869 |||| | || ||| || ||||| | ||||| || || ||||| || | ||||| Sbjct 7891 ATCGCTGCAGGGCAATGGAGGCCAAGTTGCAAACTGCGGTCTCGGTGGGCGAAGAGTACT 7950 Query 148870 CTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCT 148929 | | |||||| | |||||| ||| ||| ||||| || | ||||| || || || Sbjct 7951 CAATGATCTCAGTGCACAGGTTGGAGCACTTGATGGTCCCGAGGTTCTGCTGGTTCGACT 8010 Query 148930 TGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||| |||||||||||||||||||| ||||||||| ||||||||| ||||| Sbjct 8011 TGCGGTTGCACGCGTCCTTGTACACCATGTACGGGGTGCCAGTTTCGGTCTGCG 8064 >seq2970 Length=24236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| | ||| || || || ||||||||| ||| || | | | || ||||| Sbjct 8078 AAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA-TCTTCGAG 8020 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || ||||| | || || || || || || | || || ||||||||||| ||||| Sbjct 8019 TTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCAGTGAT 7960 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| || | | |||| ||||| || ||| || || | ||| | |||||| || Sbjct 7959 CTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTTTTCCC 7900 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| |||||| || ||||| ||||| Sbjct 7899 GGTCAAAGTTTTCACAAAAATTTGCAT 7873 >seq92520 Length=532 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 || ||||||||||| ||||| || ||||||||||| |||||| ||||| | ||| Sbjct 24 AGGCGCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 83 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 | |||||| | | ||| || || | |||| ||| || || ||||| ||||| ||||| Sbjct 84 ATTGTGTCGCTAGCCTCGACTTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTGACGAAG 143 Query 133653 ATCTGCATG 133661 || |||||| Sbjct 144 ATTTGCATG 152 >seq5492 Length=8422 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 148810 ATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACT 148869 |||| | || ||| || ||||| | |||||||| || ||||| || | ||||| Sbjct 5775 ATCGCTGCAGGGCAATGGAGGCCAAGTTGCACACCGCAGTCTCGGTGGGCGAAGAGTACT 5716 Query 148870 CTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCT 148929 | | |||||| | ||||| ||| ||| ||||| || | ||| | || || || Sbjct 5715 CGATGATCTCAGTACACAGGTTGGAGCACTTGATGGTCCCGAGGTTTTGCTGGTTCGACT 5656 Query 148930 TGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||| |||||||||||||||||||| ||||||||| ||| ||||| ||||| Sbjct 5655 TGCGGTTGCACGCGTCCTTGTACACCATGTACGGGGTGCCGGTTTCGGTCTGCG 5602 >seq27157 Length=1261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 || || ||||| || ||||| |||||||||||||| ||||| ||||| | ||| Sbjct 879 AGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCA 820 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 | ||||||| ||| ||| || || | ||| | ||| |||||||| ||||| || || || Sbjct 819 ATCGTGTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAG 760 Query 133653 ATCTGCATGGC 133663 || ||||| || Sbjct 759 ATTTGCATAGC 749 >seq2297 Length=32998 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 || ||||| || ||||| |||||||||||||| ||||| ||||| | |||| | Sbjct 3039 CGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCAATC 2980 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 |||||| ||| ||| || || | ||| | ||| |||||||| ||||| || || || || Sbjct 2979 GTGTCGCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATT 2920 Query 133656 TGCATGGC 133663 ||||| || Sbjct 2919 TGCATAGC 2912 >seq22 Length=212208 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 ||||||||||| || ||||| ||||||||||| |||||| ||||| | ||| | Sbjct 70613 CGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATG 70672 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 ||||| ||| || || || | ||||| ||| || ||||| || || || ||||| ||| Sbjct 70673 GTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTCCCGGTGAGTGTCTTCACGAAGATC 70732 Query 133656 TGCAT 133660 ||||| Sbjct 70733 TGCAT 70737 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 ||||||||||| || ||||| ||||||||||| |||||| ||||| | ||| | Sbjct 71405 CGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATG 71464 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 ||||| ||| || || || | ||||| ||| || ||||| || || || ||||| ||| Sbjct 71465 GTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTCCCGGTGAGTGTCTTCACGAAGATC 71524 Query 133656 TGCAT 133660 ||||| Sbjct 71525 TGCAT 71529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 ||| ||||||||||| || || || ||||||||||| |||||| ||||| | ||| Sbjct 71681 GAGGCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTC 71740 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||| ||| || || || | ||||| ||| || ||||| || || || ||||| Sbjct 71741 GATGGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTCCCGGTGAGTGTCTTCACGAA 71800 Query 133652 AATCTGCAT 133660 |||||||| Sbjct 71801 GATCTGCAT 71809 >seq12421 Length=2797 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 148463 CATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCC 148522 ||||||||| ||||||||||| | ||| | || ||||| || | ||| ||||| Sbjct 382 CATGTCGTATTGCAGAATGCCCCTGCTGACTGGTGATCCCTCATAGGTTTCGTAGGGTCC 441 Query 148523 GTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAAT 148582 || | |||| | ||||| ||| || || || ||||||||||| |||||| ||| Sbjct 442 GTTCTTTTCCGCTAACTCGCACGACGCTTCCAGTGCTCCGTAGTAAATTGTCTCGAAAAT 501 Query 148583 TTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACG 148641 |||| |||| | ||| |||||||| || | |||| ||| |||| | || || | Sbjct 502 TTGCTTGTTCAACAGGCGAGCCGACTCACTGGTGAACGG-ATAGCGCATCATCATGAAGG 560 Query 148642 CGTCGGCAAGGCCCT 148656 |||| || | ||||| Sbjct 561 CGTCAGCCAAGCCCT 575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 148810 ATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACT 148869 |||| | || ||| || ||||| | |||||||| || ||||| || | ||||| Sbjct 1187 ATCGCTGCAGGGCAATGGAGGCCAAGTTGCACACTGCGGTCTCGGTGGGCGAAGAGTACT 1246 Query 148870 CTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCT 148929 | | |||||| | |||||| ||| ||| ||||| || | ||||| || || || Sbjct 1247 CGATGATCTCAGTGCACAGGTTGGAGCACTTGATGGTCCCGAGGTTCTGCTGGTTCGACT 1306 Query 148930 TGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||| |||||||||||||||||||| ||| || || Sbjct 1307 TGCGGTTGCACGCGTCCTTGTACACCATATATGG 1340 >seq9051 Length=5414 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 || |||||||| || || || ||||| ||||| || |||||| ||||| | ||| Sbjct 3785 AGGCGCTGCTGATCCGGCGGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTCTCG 3844 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 | ||||| ||| ||| || || | |||| || ||||||||||| || || |||||| Sbjct 3845 ATGGTGTCACTGGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTCAGTGTCTTGACGAAA 3904 Query 133653 ATCTGCAT 133660 |||||||| Sbjct 3905 ATCTGCAT 3912 >seq3991 Length=17808 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| || || || ||||||||| ||| || ||| | |||||||| Sbjct 12083 AAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCA-TCCTCGAG 12141 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || |||| | ||| || ||||| || ||||| || |||||||| ||| Sbjct 12142 TTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGAT 12201 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | || || || || | || || | ||| | |||||| || Sbjct 12202 TTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTTTTTCC 12261 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || ||||||||||| Sbjct 12262 CGTTAGGGTTTTCACAAAAATCTGCAT 12288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482813351551000