Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3991 98.7 7e-16 seq2970 96.9 2e-15 seq1539 86.0 4e-12 seq9051 82.4 5e-11 >seq3991 Length=17808 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || ||||||||||| || || ||| ||||| ||||||||||||| | || || | Sbjct 12074 CGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCA 12133 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | ||||||||| ||||||||||| || || || || | || | ||| || ||| Sbjct 12134 TCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTG 12193 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || |||||| ||| |||| ||| ||||| || ||| || | || || Sbjct 12194 TCCTGGATTTTCGCCTTC-ACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTAT 12252 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || |||| ||||| ||||| |||||||| Sbjct 12253 GGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||| ||||| ||||||||||||| | || || | || ||| Sbjct 11852 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCC 11911 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||||||||| |||||||||| || ||||| || |||| | ||| || ||||| Sbjct 11912 AATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGG 11971 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA--TTCCAC-GTCAACCGTGATCGT 33716 |||||| ||| |||| ||| || || || || || ||| || | || || || Sbjct 11972 ATTTTCGCCTTC-ACATTGTCTACAGTATC---AGAACTTTCACATTCTAGGGTTATAGT 12027 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | |||||||| || || ||||| Sbjct 12028 TTTTCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || |||||||| || ||| ||||||||| || ||||| |||| | || || | Sbjct 17042 CGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCA 17101 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || ||||||||||| || ||||| |||| || |||||||| || | || || || Sbjct 17102 TCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 17161 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || | || || || || |||| || | ||| || || || || || | || || Sbjct 17162 TCAGTGATCTT-TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTAT 17220 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || || ||||| ||||| || ||||| Sbjct 17221 GGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 >seq2970 Length=24236 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||| | || || ||||| || || || ||| ||||| ||||||||||||| Sbjct 14497 CACCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGG 14438 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || | || |||||||||||||| ||||| |||||||| |||||||| | | Sbjct 14437 CCAAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTG 14378 Query 33641 GCACACCTTCTTTGTC 33656 | | ||| || ||||| Sbjct 14377 GGATACCCTCCTTGTC 14362 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || |||||||| |||||||| |||| | ||||| | || ||| Sbjct 14249 ACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCTTCC 14190 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||||||||| |||||||||| || |||||||| | || | ||| || ||||| Sbjct 14189 AATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGG 14130 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC-GTCAACCGTGATCGTTT 33718 ||||| || | |||| ||| || || || | || ||| || | || || |||| Sbjct 14129 ATTTT-TGCCTTCACATTGTCTACAGTATC-CGAACTTTCACATTCCAGGGTTATGGTTT 14072 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| ||||| |||||||| Sbjct 14071 TTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || |||||||| || || ||||||||| ||||||||||||| | ||||| | Sbjct 7859 CGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCA 7800 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | |||||| || ||||| |||| || || ||||| ||| | || || ||| Sbjct 7799 TCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTG 7740 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || | || || || || |||| || | ||| || || || || || | || || Sbjct 7739 TCAGTGATCTT-TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTAT 7681 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || || ||||| ||||| || ||||| Sbjct 7680 GGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || ||||| || || || ||| ||||| ||||||||||||| | || || | Sbjct 8087 CGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA 8028 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | ||||||||| ||||| |||| || || ||||| ||| | |||||| ||| Sbjct 8027 TCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTG 7968 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || | || || || || || || || | ||||| | || || || | || || Sbjct 7967 TCAGTGATCTT-TGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTAT 7909 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || || ||||| ||||| || ||||| Sbjct 7908 GGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 >seq1539 Length=61058 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || ||||| || || || ||| ||||| ||||||||||||| | ||||| | Sbjct 9561 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9502 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||||||||||||| ||||| || | || |||||||| || | || || || Sbjct 9501 TCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9442 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || | || || || || |||| || | ||| || || || || || | || || Sbjct 9441 TCAGTGATCTT-TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTAT 9383 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || || ||||| ||||| || ||||| Sbjct 9382 GGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 >seq9051 Length=5414 Score = 82.4 bits (90), Expect = 5e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||| | ||| |||||| ||| ||||| ||||||||||| | | Sbjct 4490 CCTCCGCGCAGACGCAGCACGAGATGCAGAGTGGACTCCTTTTGGATGTTGTAATCCGCG 4549 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGC 33627 ||||| || |||| || | |||||||||||| |||||| || || Sbjct 4550 AGTGTACGGCCGTCCTCAAGTTGTTTTCCGGCGAAAATCTAAAGC 4594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328301288808000