Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2970 113 1e-19 seq3991 109 1e-18 seq1539 91.5 3e-13 seq9051 86.0 1e-11 >seq2970 Length=24236 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || || ||||| |||||||| || || || || Sbjct 14284 AAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTCGGATACTGTAGACAAT 14343 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||| || || || || || || || ||||| ||| | | ||||| Sbjct 14344 GTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCAGCAACGTTTGATCTTT 14403 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| || ||||||||||| | |||||||||||||||||| |||| || ||||| Sbjct 14404 GCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACAACATCCAAAAGGAGTCA 14463 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||| | |||||| | ||| || Sbjct 14464 ACCCTCCACTTGGTTTTGCGCCTTAGA 14490 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || |||||||| || || ||||| |||||||| || Sbjct 14044 CAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTCGGAT 14103 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || || || || ||| ||| || || || || || || || ||||| ||| Sbjct 14104 ACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCAGCAA 14163 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || ||||| || ||||||||||| | ||||||||||| |||||| || Sbjct 14164 CGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTACAACATC 14223 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 || ||||| || || || ||| | ||| || Sbjct 14224 CAAAAAGAATCAACCCTCCACTTGGTTCTG 14253 Score = 100 bits (110), Expect = 7e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 ||||| | || || ||||| || || |||| || || ||| |||||||| | || | Sbjct 7888 AAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTACTGACACAATTGATAAT 7947 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 | ||||||||| ||| || || ||||| ||| | | || ||| | || ||||| Sbjct 7948 ATTAAAGCAAA-GATCACTGACAAGGAAGGTATTCCGACTGATCAACAACGCCTGATCTT 8006 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || | |||||||| | |||||||||||||||||| |||| || ||| | Sbjct 8007 TGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAACATCCAAAAGGAGGC 8066 Query 206364 TACTCTTCACCTTGTTTTG 206382 || || ||| | |||||| Sbjct 8067 AACCCTCCACTTGGTTTTG 8085 >seq3991 Length=17808 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || || | ||| ||||||||||| || || || Sbjct 12045 AAAACTCTGACTGGAAAAACTATAACCCTAGAATGTGAAAGTTCTGATACTGTAGACAAT 11986 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || || || || || ||||||| ||| | || || || Sbjct 11985 GTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCAGCAACGCCTGATTTTT 11926 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| || ||||||||||| | |||||||||||||||||| |||| || ||||| Sbjct 11925 GCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTACAACATCCAAAAGGAGTCA 11866 Query 206365 ACTCTTCACCTTGTTTTG 206382 || || ||| | ||| || Sbjct 11865 ACCCTCCACTTGGTTCTG 11848 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || |||||||| || || |||||| ||||||||||| Sbjct 12285 CAGATTTTTGTGAAAACCCTAACGGGAAAAACCATAACCTTGGAATGCGAAAGTTCTGAT 12226 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || || || || ||| || || || || || || || || |||||| ||| Sbjct 12225 ACCGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCACCGGACCAACAA 12166 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || || ||||| || | || ||||| | |||||||||||||||||| || Sbjct 12165 CGGTTGATTTTTGCAGGAAAACAACTCGAGGATGGTCGTACTTTGGCCGATTACAACATC 12106 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || ||||| || || || Sbjct 12105 CAAAAGGAGTCAACCCTCCA 12086 >seq1539 Length=61058 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || || ||||| || || || ||| || | || Sbjct 9362 AAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGTGATACCATTGATAAT 9421 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||| || || || || ||| | || ||| | || ||||| Sbjct 9422 GTGAAAGCAAA-GATCACTGATAAGGAGGGCATTCCAACTGATCAGCAACGCCTCATCTT 9480 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || ||||||||||| | |||||||||||||||||| |||| || ||| | Sbjct 9481 TGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTACAACATCCAAAAGGAGGC 9540 Query 206364 TACTCTTCACCTTGTTTTG 206382 || |||||| | |||||| Sbjct 9541 AACCCTTCACTTGGTTTTG 9559 >seq9051 Length=5414 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || |||||| | || ||||| | ||| | |||||||||||| ||||||| Sbjct 3729 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTGCCGATTACAACATCCAGAAG 3670 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || |||||||| ||| | ||||| Sbjct 3669 GAGTCCACCCTGCACCTTGTGTTGCGTCTTCG 3638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180298642508525