Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3991 114 1e-20 seq2970 114 1e-20 seq1539 111 1e-19 seq10184 84.2 2e-11 seq2067 84.2 2e-11 >seq3991 Length=17808 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||||||||||||| | | | | ||||||||| || ||||||||| || || || Sbjct 17269 GCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCC 17328 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| || ||||| || | | |||| || || |||||||| | |||||||| || || Sbjct 17329 ATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTT 17388 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| || || ||| ||||| | || | ||||| | ||| || || | || | Sbjct 17389 ATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTAT 17448 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| |||||| | ||||| ||||| Sbjct 17449 GGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||||||||||||| | | | | ||||||||| || ||||||||| || ||||| Sbjct 17041 GCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCC 17100 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| | ||||| || | | |||| || || || ||||| | || ||||| || || Sbjct 17101 ATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTT 17160 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| || || ||| ||||| | || | ||||| | ||| || || | || | Sbjct 17161 ATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTAT 17220 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| |||||| | ||||| ||||| Sbjct 17221 GGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| |||||| || | | ||||||| ||||| |||||||| ||| || || || Sbjct 11845 GCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCC 11904 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| | ||||| || | | | || || || || || || || || || || || || Sbjct 11905 ATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTT 11964 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||||| |||| | || |||||||| | || ||| | || | Sbjct 11965 GTCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCTAGGGTTAT 12024 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||||||||||| |||||| ||||| Sbjct 12025 AGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 >seq2970 Length=24236 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||||||||||||| | | ||| ||||||||| |||||||| ||| | || || Sbjct 7860 GCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCC 7801 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||||||||| ||||| || | | |||| || || |||||||| | |||||||| || || Sbjct 7800 ATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTT 7741 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || ||| ||||| | || | ||||| | ||| || || | || | Sbjct 7740 GTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTAT 7681 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| |||||| | ||||| ||||| Sbjct 7680 GGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||||||||| || | | ||| ||| ||||| |||||||| ||| || || || Sbjct 8316 GCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCC 8257 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||||||||| ||||| || | | |||| || || |||||||| | |||||||| || || Sbjct 8256 ATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTT 8197 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || ||| ||||| | || | ||||| | ||| || || | || | Sbjct 8196 GTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTAT 8137 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| |||||| | ||||| ||||| Sbjct 8136 GGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||||||||| || | | ||| ||| ||||| |||||||| ||| || || || Sbjct 8088 GCGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCC 8029 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||||||||| ||||| || | | |||| || || |||||||| | || || ||||| || Sbjct 8028 ATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTT 7969 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || ||| ||| | | || | || || || ||| || || | || | Sbjct 7968 GTCAGTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTAT 7909 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| |||||| | ||||| ||||| Sbjct 7908 GGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||||||||| || | | ||||||| ||||| |||||||| ||| || ||||| Sbjct 14484 GCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCC 14425 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| | ||||| || | | |||| | ||| || ||||| || || || || || || Sbjct 14424 ATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTT 14365 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || |||||| |||| | || |||||||| | || ||| | || | Sbjct 14364 GTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTAT 14305 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||||||||| | |||||| ||||| Sbjct 14304 GGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| |||||| || | | |||| |||||||| |||||||||||| || || || Sbjct 14256 GCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCC 14197 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| | ||||| || | | | || || || || ||||| || || || || || || Sbjct 14196 ATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTT 14137 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || |||||| |||| | || |||||||| | || ||| | || | Sbjct 14136 GTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTAT 14077 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| ||||| | ||||||||||| Sbjct 14076 GGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 >seq1539 Length=61058 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||||||||| || | | ||| ||| ||||| |||||||| ||| || || || Sbjct 9334 GCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCC 9275 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||||||||| ||||| || | | |||| || || || ||||| | || ||||| || || Sbjct 9274 ATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTT 9215 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| || || ||| ||||| | || | ||||| | ||| || || | || | Sbjct 9214 ATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTAT 9155 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| ||||| | |||||| ||||| Sbjct 9154 GGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||||||||| || | | ||| ||| ||||| |||||||| ||| || || || Sbjct 9562 GCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCC 9503 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| | ||||| || | | |||| || || || ||||| | || ||||| || || Sbjct 9502 ATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTT 9443 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| || || ||| ||||| | || | ||||| | ||| || || | || | Sbjct 9442 ATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTAT 9383 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| |||||| | ||||| ||||| Sbjct 9382 GGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 >seq10184 Length=3342 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 131939 TGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGA 131998 ||||||||||||||| || ||| || || || || ||||| |||| |||| || Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 131999 CGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACA 132058 ||||| || || || || |||||||| || || || || |||| | ||||| Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 132059 GTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATC 132118 || ||| ||| |||||| || | || | ||| || || ||||| || || | ||| || Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 132119 TGCATG 132124 |||||| Sbjct 968 TGCATG 973 >seq2067 Length=34267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 131939 TGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGA 131998 ||||||||||||||| || ||| || || || || ||||| |||| |||| || Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 131999 CGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACA 132058 ||||| || || || || ||||| || || || || || |||| | ||||| Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACT 29699 Query 132059 GTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATC 132118 |||||| ||| |||||| || | || | ||| || || ||||| || || | ||| || Sbjct 29700 GTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 29759 Query 132119 TGCATG 132124 |||||| Sbjct 29760 TGCATG 29765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476012308239000