Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq72487 91.5 5e-15 seq49254 91.5 5e-15 seq22566 91.5 5e-15 seq1336 91.5 5e-15 seq433 91.5 5e-15 seq205 91.5 5e-15 seq1220 84.2 7e-13 >seq72487 Length=641 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 394 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 451 >seq49254 Length=842 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 748 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 691 >seq22566 Length=1444 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 518 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 461 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 936 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 879 >seq1336 Length=40240 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 19104 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 19047 >seq433 Length=97335 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 82239 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 82296 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 82513 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 82570 >seq205 Length=97376 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 63005 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 62948 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 63608 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 63551 >seq1220 Length=33624 Score = 84.2 bits (92), Expect = 7e-13 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGC 2834 |||||||||||||||||| |||||| |||||||||||||||||| |||| | ||||||| Sbjct 1605 TAGCTCAGTTGGGAGAGCGTTAGACCGAAGATCTAAAGGTCCCTAGTTCGATCCCGGGC 1547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15832173488625