Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2970 111 1e-19 seq3991 107 2e-18 seq1539 98.7 8e-16 >seq2970 Length=24236 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| ||||| || || ||||| ||| |||| || | | Sbjct 7644 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 7703 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | |||||| ||| || | ||||| || ||| | || |||||| Sbjct 7704 TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCA 7763 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | || || | |||||| |||||| | |||||| ||| | | ||||||||| Sbjct 7764 ACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTACAA 7823 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| |||||||| | || || ||||| || ||| Sbjct 7824 CATCCAAAAAGAGGCAACCCTTCATTTGGTTTTG 7857 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| ||||| || || ||||| ||| |||| || | | Sbjct 8100 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 8159 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | |||||| ||| || | ||||| || ||| | || |||||| Sbjct 8160 TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATCA 8219 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | || || | |||||| |||||| | |||||| |||| ||| ||||||||| Sbjct 8220 ACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAA 8279 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| ||||| || | || || || || || ||| Sbjct 8280 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTTG 8313 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| |||||||| ||||| |||| || || ||||| ||| ||||| ||| Sbjct 14040 AATGCAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTC 14099 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| |||| | | | ||||| |||||| ||||| || || | || ||||| Sbjct 14100 GGATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCA 14159 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| |||| |||| ||| || |||||||| |||||| ||| ||| ||| ||||| Sbjct 14160 GCAACGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTACAA 14219 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 ||| ||||||||||| || || || || || Sbjct 14220 CATCCAAAAAGAATCAACCCTCCACTTGGT 14249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || ||||| |||| || || ||||| ||| ||||| ||| Sbjct 14268 AATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTC 14327 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| |||| | | | ||||| |||||| ||||| || || | || ||||| Sbjct 14328 GGATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCA 14387 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | || | ||| || |||||||| |||||| ||| ||| ||||||||| Sbjct 14388 GCAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACAA 14447 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| ||||| || || || || || || || ||| | | ||||||| Sbjct 14448 CATCCAAAAGGAGTCAACCCTCCACTTGGTTTTGCGCCTTAGAGGAGG 14495 >seq3991 Length=17808 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| ||||| || || ||||| ||| |||| || | | Sbjct 17485 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 17426 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | |||||| ||| || | || || || ||| | || |||||| Sbjct 17425 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATACCGACTGATCA 17366 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | || || | |||||| |||||| |||||||| ||| ||| ||| ||||| Sbjct 17365 ACAACGCCTGATCTTTGCGGGGAAACAACTAGAAGATGGCCGCACTTTGGCCGACTACAA 17306 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || |||||||| | || || ||||| || ||| Sbjct 17305 TATCCAAAAAGAGGCCACCCTTCATTTGGTTTTG 17272 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| ||||| || || ||||| ||| |||| || | | Sbjct 17257 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 17198 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | |||||| ||| || | || || || ||| | || |||||| Sbjct 17197 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 17138 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | || || | |||||| |||||||| |||||| ||| ||| ||| ||||| Sbjct 17137 GCAACGCCTGATCTTTGCGGGGAAACAATTGGAAGATGGCCGTACTTTGGCCGACTACAA 17078 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || |||||||| | || || ||||| || ||| Sbjct 17077 TATCCAAAAAGAGGCCACCCTTCATTTGGTTTTG 17044 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || ||||| ||||||| || || || ||| | ||| ||| Sbjct 12061 AATGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGTGAAAGTTC 12002 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| |||| | | | ||||| ||||| ||||| || || | || || || Sbjct 12001 TGATACTGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCA 11942 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | || |||| ||| || |||||||| |||||| |||| ||| ||||||||| Sbjct 11941 GCAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTACAA 11882 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 ||| ||||| || || || || || || || Sbjct 11881 CATCCAAAAGGAGTCAACCCTCCACTTGGT 11852 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| |||||||| ||||| | || || || ||||| ||| ||||| ||| Sbjct 12289 AATGCAGATTTTTGTGAAAACCCTAACGGGAAAAACCATAACCTTGGAATGCGAAAGTTC 12230 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | || | | | ||||| ||||| ||||| || || | || || || Sbjct 12229 TGATACCGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCACCGGACCA 12170 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| || | |||| ||| || |||||| | || ||| | ||| ||| ||||||||| Sbjct 12169 ACAACGGTTGATTTTTGCAGGAAAACAACTCGAGGATGGTCGTACTTTGGCCGATTACAA 12110 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| ||||| || || || || ||||| || ||| Sbjct 12109 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTG 12076 >seq1539 Length=61058 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| ||||| || || ||||| ||| |||| || | | Sbjct 9346 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 9405 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | |||||| ||| || | || || || ||| | || |||||| Sbjct 9406 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 9465 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | || || | ||| || |||||||| |||||| ||| ||| ||||||||| Sbjct 9466 GCAACGCCTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTACAA 9525 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| ||||| || | || || || || || ||| Sbjct 9526 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTTG 9559 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || ||||| |||| || || ||||| ||| |||| || | | Sbjct 9118 AATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAGGTCGAGAGCAG 9177 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | |||||| ||| || | || || || ||| | || |||||| Sbjct 9178 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 9237 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | || || | |||||| |||||| | |||||| ||| ||| ||||||||| Sbjct 9238 GCAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGATTACAA 9297 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| ||||| || | || || || || || ||| Sbjct 9298 CATCCAAAAGGAGGCAACCCTTCACTTGGTTTTG 9331 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || ||||| |||| || || ||||| || |||| || | | Sbjct 9574 AATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACTCTGGAGGTCGAGAGCAG 9633 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | |||||| ||| || | || || || ||| | || |||||| Sbjct 9634 TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATCA 9693 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | || || | |||||| |||||| | |||||| ||| ||| ||| ||||| Sbjct 9694 GCAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGACTACAA 9753 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || |||||||| | || || ||||| || ||| Sbjct 9754 TATCCAAAAAGAGGCCACCCTTCATTTGGTGTTG 9787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401836686519200