Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq10184 131 2e-25 seq2970 131 2e-25 seq2067 127 2e-24 seq3991 123 2e-23 seq1539 122 8e-23 seq8832 118 1e-21 >seq10184 Length=3342 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 35552 TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAAC 35611 ||||||||||| ||||||| ||| || |||| ||||| || || || || || || | Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 35612 CGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACC 35671 ||||||||||||| || | || ||||||||| |||||| ||||| | ||||| Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 35672 GTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATC 35731 |||||| |||| ||||| |||| |||||||| || || |||| || ||||| || || Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 35732 TGCAT 35736 ||||| Sbjct 968 TGCAT 972 >seq2970 Length=24236 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| ||||| || | || ||||||||| ||||||||||||||||| ||||| | || Sbjct 8313 CAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATC 8254 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || || || || |||||||| |||| || || || || | || | || ||||||||| Sbjct 8253 TTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTC 8194 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||||| |||| | | | | || || || || ||||||| || || || Sbjct 8193 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 8134 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||| || ||||||||||||||||| || ||||||| Sbjct 8133 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCATTC 8099 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| |||||||| | || ||| ||||| |||||||||||||| || || || | || Sbjct 7857 CAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCATC 7798 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || || || || |||||||| |||| || || || || | || | || ||||||||| Sbjct 7797 TTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTC 7738 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||||| |||| | | | | || || || || ||||||| || || || Sbjct 7737 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 7678 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||| || ||||||||||||||||| || ||||||| Sbjct 7677 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCATTC 7643 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| ||||| || | || ||||||||| ||||||||||||||||| ||||| | || Sbjct 8085 CAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATC 8026 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || || || || |||||||| |||| || || || || | |||| | |||||||| Sbjct 8025 TTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTC 7966 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||||| || | | | | | ||||| | || ||||||| || || || Sbjct 7965 AGTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGT 7906 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||| || ||||||||||||||||| || ||||||| Sbjct 7905 TTTCCCGGTCAAAGTTTTCACAAAAATTTGCATTC 7871 Score = 114 bits (126), Expect = 1e-20 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| ||||| || | || ||||||||| ||||||||||||||||| || || | || Sbjct 14481 CAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATC 14422 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| || || || ||||| ||||| || ||||| |||| || | | ||||||||| Sbjct 14421 TTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTC 14362 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA--TTCCAC-CTCCACCGTGAT 35700 | ||| ||| ||||| | | | || || || ||| || ||| |||| || || Sbjct 14361 CTGGATTTTTGCCTTCACATTGTCTACAGTATC---CGAACTTTCACATTCCAGGGTTAT 14305 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| || |||| ||||||||| || || ||||||| Sbjct 14304 GGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCATTC 14267 Score = 107 bits (118), Expect = 2e-18 Identities = 148/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| |||||||| || || | || |||| || || || ||||| Sbjct 14231 TCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAA 14172 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||| ||||| |||| || | | |||||||||| ||| ||| ||||| | | Sbjct 14171 ATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTG 14112 Query 35666 GCCACCGTGTCGCTCGA--TTCCACCT-CCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | || || || ||| || ||| | ||| || || ||||| || |||| |||||| Sbjct 14111 TCTACAGTATC---CGAACTTTCACATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTC 14055 Query 35723 ACAAATATCTGCATTCTGTGCGCA 35746 ||||| |||||||||| || ||| Sbjct 14054 ACAAAAATCTGCATTCCATGGGCA 14031 >seq2067 Length=34267 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 35552 TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAAC 35611 ||||||||||| ||||||| ||| || |||| ||||| || || || || || || | Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 35612 CGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACC 35671 ||||||||||||| || | || |||||||||| |||||| ||||| | |||| Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACT 29699 Query 35672 GTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATC 35731 || ||| |||| ||||| |||| |||||||| || || |||| || ||||| || || Sbjct 29700 GTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 29759 Query 35732 TGCAT 35736 ||||| Sbjct 29760 TGCAT 29764 >seq3991 Length=17808 Score = 123 bits (136), Expect = 2e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 |||||||||||| | || ||||||||| ||||||||||||||||| || || | || Sbjct 12076 CAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATC 12135 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || || || || || ||||| |||||||| || ||||||| || | | ||||||||| Sbjct 12136 CTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTC 12195 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | ||| || ||||| | | | || || || ||| |||| || || || Sbjct 12196 CTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGT 12255 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCGCA 35746 ||| ||||| | ||||||||||| |||||||||| || ||| Sbjct 12256 TTTTCCCGTTAGGGTTTTCACAAAAATCTGCATTCCATGGGCA 12298 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| |||||||| | || ||| ||||| || ||||| |||||||| || || | || Sbjct 17044 CAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATC 17103 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| || || |||||||| |||| || ||||| || | |||| || |||||| || Sbjct 17104 TTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATC 17163 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||||| |||| | | | | || || || || ||||||| || || || Sbjct 17164 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 17223 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||| || ||||||||||||||||| || ||||||| Sbjct 17224 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCATTC 17258 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| |||||||| | || ||| ||||| || ||||| |||||||| || || | || Sbjct 17272 CAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATC 17331 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || || || || |||||||| |||| || || || || | || | || |||||| || Sbjct 17332 TTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTATC 17391 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||||| |||| | | | | || || || || ||||||| || || || Sbjct 17392 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 17451 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||| || ||||||||||||||||| || ||||||| Sbjct 17452 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCATTC 17486 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| ||||||||||||||||| ||||| | || |||| || || || ||||| Sbjct 11869 CTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAA 11928 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||||||| || | | |||||||||| ||| || ||||| | | Sbjct 11929 AATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATT 11988 Query 35665 TGCCACCGTGTC-GCTCGATTCCAC-CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | || || || | | || ||| || | || || ||||| || |||| |||||| Sbjct 11989 GTCTACAGTATCAGAAC--TTTCACATTCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTT 12046 Query 35723 ACAAATATCTGCATTC 35738 || || || ||||||| Sbjct 12047 ACGAAAATTTGCATTC 12062 >seq1539 Length=61058 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| ||||| || | || ||||||||| ||||||||||||||||| || || | || Sbjct 9559 CAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATC 9500 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| || || || ||||| || | || ||||| || | |||| || |||||| || Sbjct 9499 TTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATC 9440 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||||| |||| | | | | || || || || ||||||| || || || Sbjct 9439 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGT 9380 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||| || ||||||||||||||||| || ||||||| Sbjct 9379 TTTTCCGGTCAAAGTTTTCACAAAAATTTGCATTC 9345 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| ||||| || | || ||||||||| ||||||||||||||||| || || | || Sbjct 9331 CAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATC 9272 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || || || || |||||||| || | || ||||| || | |||| || |||||| || Sbjct 9271 TTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATC 9212 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||||| |||| | | | | || || || || ||||||| || || || Sbjct 9211 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATGGT 9152 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||| || |||| |||||||| || || ||||||| Sbjct 9151 TTTTCCGGTCAGGGTTTTCACGAAAATTTGCATTC 9117 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 |||||||||||| | || ||| ||||| || ||||| |||||||| || || | || Sbjct 9787 CAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATC 9728 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || || || || |||||||| || | || ||||| || | |||| || |||||| || Sbjct 9727 TTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATC 9668 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||||| |||| | | | | || || || || ||||||| || || || Sbjct 9667 AGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATGGT 9608 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||| || |||| |||||||| || || ||||||| Sbjct 9607 TTTTCCGGTCAGGGTTTTCACGAAAATTTGCATTC 9573 >seq8832 Length=4481 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 35552 TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAAC 35611 ||||||||||| ||||||| ||| || | || ||||| || || || || || || | Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 35612 CGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACC 35671 || |||||||||| || | || |||||| ||| |||||| ||||| | ||||| Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACC 721 Query 35672 GTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATC 35731 |||||| |||| |||| |||| |||||||| || || |||| || ||||| || || Sbjct 722 GTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 781 Query 35732 TGCAT 35736 ||||| Sbjct 782 TGCAT 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450227149667000