Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq51152 96.9 3e-15 seq8845 91.5 1e-13 >seq51152 Length=820 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 43892 AATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGG 43951 |||| |||| || ||||| |||||||| || |||| ||||| || ||||| || ||| Sbjct 463 AATTAGGTTGAACGTTTTGCCCAAGAAGTCCAGATACCTGAAGCTCGCTGTTTCTACGGG 404 Query 43952 TTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 || ||||||||||| || |||||||| ||||||||||| Sbjct 403 TTCCAAATTGCCATTGAGAATATTCACTCGGAAATGTA 366 >seq8845 Length=2813 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 43892 AATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGG 43951 |||| |||| || ||||| |||||||| || |||| ||||| || ||||| || ||| Sbjct 1619 AATTAGGTTGAACGTTTTGCCCAAGAAGTCCAGATACCTGAAGCTCGCTGTTTCTACGGG 1678 Query 43952 TTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||| || || |||||||| ||||||||||| Sbjct 1679 TTCCAAATTGCAATTGAGAATATTCACTCGGAAATGTA 1716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396969057402625