Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1539 118 9e-22 seq3991 113 4e-20 seq2970 104 2e-17 seq8832 100 2e-16 seq2067 100 2e-16 seq10184 96.9 3e-15 seq12421 82.4 6e-11 >seq1539 Length=61058 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | || | |||||||| |||||||||||| || |||| | Sbjct 9789 CGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCA 9730 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 |||||||| ||||| || || | ||||| || || ||||| | || | ||||| ||| Sbjct 9729 TCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9670 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || | |||||| ||||| | || | || || || || || || |||||||| Sbjct 9669 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATG 9610 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || ||||| |||||||| || |||||||| Sbjct 9609 GTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || | || ||||| || ||||| ||| || |||| | Sbjct 9561 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCA 9502 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || || | ||||| || || ||||| | || | ||||| ||| Sbjct 9501 TCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 9442 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || | |||||| ||||| | || | || || || || || || | ||||| Sbjct 9441 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 9382 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| |||||||||||| |||||||| Sbjct 9381 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 >seq3991 Length=17808 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | || | |||||||| |||||||||||| || |||| | Sbjct 17270 CGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCA 17329 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || ||||| || || | || || || |||||||| | ||| | ||||| ||| Sbjct 17330 TCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTA 17389 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || | |||||| ||||| | || | || || || || || || | ||||| Sbjct 17390 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 17449 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| |||||||||||| |||||||| Sbjct 17450 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || || ||||| || ||||| ||| || | || | Sbjct 11846 CGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA 11905 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || || |||| || || || || |||||||| | |||||| || Sbjct 11906 TCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTG 11965 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || |||| | |||||||| || | |||| |||||| |||||| Sbjct 11966 TCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCTAGGGTTATA 12025 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || ||||||||||| || || |||||||| Sbjct 12026 GTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCAT 12060 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | || | |||||||| |||||||||||| || | || | Sbjct 17042 CGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCA 17101 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || || | || || || || ||||| | || | ||||| ||| Sbjct 17102 TCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTA 17161 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || | |||||| ||||| | || | || || || || || || | ||||| Sbjct 17162 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 17221 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| |||||||||||| |||||||| Sbjct 17222 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | || || || ||||| || ||||| ||| || | || | Sbjct 12074 CGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCA 12133 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || ||||| ||||| || || |||| | || ||||| ||||| || | |||||| || Sbjct 12134 TCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTG 12193 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || |||| | ||||| || || | ||| ||| | ||||| Sbjct 12194 TCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATG 12253 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| ||||| || ||||||||||| || ||||| Sbjct 12254 GTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 >seq2970 Length=24236 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTC 27091 ||||| |||||||| | || | |||||||| || ||||| ||| || | || ||| | Sbjct 7859 CGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGT-GCGGCC 7801 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 |||||||| ||||| || || | || || || |||||||| | ||| | ||||| || Sbjct 7800 ATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTT 7741 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || | |||||| ||||| | || | || || || || || || | ||||| Sbjct 7740 GTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTAT 7681 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| |||||||||||| |||||||| Sbjct 7680 GGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || |||||||| || ||||||||| || |||| | Sbjct 14255 CGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCA 14196 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || || |||| || || || |||||||| || | |||||| || Sbjct 14195 TCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTG 14136 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || |||| | |||||||| || | |||| ||| || ||||| Sbjct 14135 TCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATG 14076 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || ||||| ||||||||||| || ||||| Sbjct 14075 GTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || | || ||||| || ||||| ||| || | || | Sbjct 8087 CGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA 8028 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 |||||||| ||||| || || | || || || |||||||| | ||| | ||| || || Sbjct 8027 TCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTG 7968 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || | |||||| ||| | | || | ||||| || || || || || ||||| Sbjct 7967 TCAGTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATG 7908 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| |||||||||||| |||||||| Sbjct 7907 GTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || || ||||| || ||||| ||| || | || | Sbjct 14483 CGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCA 14424 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || || | || | ||| || |||||||| || | |||||| || Sbjct 14423 TCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTG 14364 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || |||| | |||||||| || | |||| ||| || ||||| Sbjct 14363 TCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATG 14304 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||||||||||||| || |||||||| Sbjct 14303 GTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || | || ||||| || ||||| ||| || | || | Sbjct 8315 CGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCA 8256 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 |||||||| ||||| || || | || || || |||||||| | ||| | ||||| || Sbjct 8255 TCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTG 8196 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || | |||||| ||||| | || | || || || || || || | ||||| Sbjct 8195 TCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATG 8136 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| |||||||||||| |||||||| Sbjct 8135 GTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 >seq8832 Length=4481 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27063 TGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGA 27122 ||||| ||||||||| || | |||| | || || || ||||| |||||| | ||||| Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 27123 CGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACA 27182 || || || |||||||| | ||||| ||||| ||||||| |||| | | || || Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACC 721 Query 27183 GTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATT 27242 ||||| | | || | || || || || | || || ||||| || ||||| |||||| Sbjct 722 GTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 781 Query 27243 TGCATAGC 27250 ||||| || Sbjct 782 TGCATGGC 789 >seq2067 Length=34267 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27063 TGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGA 27122 ||||| ||||||||| || | |||| |||| || || ||||| |||||| | ||||| Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 27123 CGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACA 27182 ||||| || |||||||| | ||||| || || ||||||| |||| | | || || Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACT 29699 Query 27183 GTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATT 27242 || || | | || || || | || || | || || ||||| || ||||| |||||| Sbjct 29700 GTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 29759 Query 27243 TGCATAGC 27250 ||||| || Sbjct 29760 TGCATGGC 29767 >seq10184 Length=3342 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27063 TGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGA 27122 ||||| ||||||||| || | |||| |||| || || ||||| |||||| | || || Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 27123 CGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACA 27182 ||||| || |||||||| | || || || || ||||||| |||| | | || || Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 27183 GTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATT 27242 ||||| | | || || || | || || | || || ||||| || ||||| |||||| Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 27243 TGCATAGC 27250 ||||| || Sbjct 968 TGCATGGC 975 >seq12421 Length=2797 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 130759 GATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAA 130818 |||||| || || |||| ||| |||||||| ||| |||||| ||| | || ||||| Sbjct 129 GATTTGGAAGTCGCCAGACAGCACGCGTCTGCTGTAGATGTTGGATGTGTATGGCTCAAA 188 Query 130819 GGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCAT 130863 ||| ||||||||||||| ||||| || || | ||||| ||||| Sbjct 189 GGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGCAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424413792283800