Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq52 84.2 3e-11 seq15872 82.4 1e-10 seq263 82.4 1e-10 seq243 82.4 1e-10 seq133 82.4 1e-10 >seq52 Length=196430 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 |||||||| || || || || ||||| | || || || |||| ||| || || || Sbjct 168138 CCCACCGCGTCGATTTCGTCGATGAACAAGATGCAAGGGGCCTTTTTGCGCGCCATCTCG 168079 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | || || |||| | | |||||| || |||||||| |||| ||| | | | | Sbjct 168078 AACATGTCCCGGACCCGACTCGGACCCACGCCCACAAACATTTCCAGAAACTCGGAGCCG 168019 Query 11744 GAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 ||| |||| ||||||||| ||||| | || || ||| | ||| ||| | |||||||| Sbjct 168018 GAG-ACTGTGATGAATGGAACATTGGCCTCGCCAGCGGTCGCTTTGGCCAACAGGGTCTT 167960 Query 11803 TCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 ||| || || || || | |||||||| || Sbjct 167959 TCCAGTCCCGGGTGGGCCGGTCAGAAGGGCACC 167927 >seq15872 Length=1983 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 145289 TAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGTAG 145348 |||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || || Sbjct 764 TAGTGTAGTGGTGATCACATTGGACTTTGAATCCAATAACCCCGGTTCGAATCCGGGCAG 705 Query 145349 GAGCT 145353 || || Sbjct 704 GACCT 700 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 145289 TAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGTAG 145348 |||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || || Sbjct 909 TAGTGTAGTGGTAATCACATTGGACTTTGAATCCAATAACCCCGGTTCGAATCCGGGCAG 968 Query 145349 GAGCT 145353 || || Sbjct 969 GACCT 973 >seq263 Length=91370 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 145289 TAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGTAG 145348 |||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || || Sbjct 64951 TAGTGTAGTGGTGATCACATTGGACTTTGAATCCAATAACCCCGGTTCGAATCCGGGCAG 65010 Query 145349 GAGCT 145353 || || Sbjct 65011 GACCT 65015 >seq243 Length=91192 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 145289 TAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGTAG 145348 |||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || || Sbjct 71886 TAGTGTAGTGGTGATCACATTGGACTTTGAATCCAATAACCCCGGTTCGAATCCGGGCAG 71945 Query 145349 GAGCT 145353 || || Sbjct 71946 GACCT 71950 >seq133 Length=225505 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 145289 TAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGTAG 145348 |||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || || Sbjct 201366 TAGTGTAGTGGTGATCACATTGGACTTTGAATCCAATAACCCCGGTTCGAATCCGGGCAG 201425 Query 145349 GAGCT 145353 || || Sbjct 201426 GACCT 201430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627242838540000