Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1539 152 2e-31 seq3991 141 3e-28 seq2970 141 3e-28 seq27157 104 7e-17 seq2297 100 9e-16 seq2260 91.5 4e-13 seq6138 87.8 5e-12 seq4044 87.8 5e-12 >seq1539 Length=61058 Score = 152 bits (168), Expect = 2e-31 Identities = 159/206 (77%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 140534 ATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTG 140593 |||||| || | ||||||||| ||||| || || | || || || |||||||| ||||| Sbjct 9778 ATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCTTCGAGTTG 9719 Query 140594 TTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTT 140653 |||||| |||||||| || ||||||||||||| ||||| || || ||||| || || Sbjct 9718 TTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTT 9659 Query 140654 AGCTTTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAACTGTCTTTCCGG 140712 ||||| ||||||||||| | |||| || | || || || || || | || ||||||| Sbjct 9658 TGCTTTCACATTATCAATGGTATCA-CTGCTCTCGACCTCCAGAGTTATGGTTTTTCCGG 9600 Query 140713 TTAGTGTTTTTACAAAAATCTGCATT 140738 | || ||||| || ||||| |||||| Sbjct 9599 TCAGGGTTTTCACGAAAATTTGCATT 9574 Score = 147 bits (162), Expect = 7e-30 Identities = 161/210 (77%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || | ||| ||||| || || ||||| | || || || |||||||| | Sbjct 9325 CAAG-TGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCGA 9267 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 |||||||||| |||||||| || ||||||||||||| ||||| || || ||||| | Sbjct 9266 GTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGA 9207 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAACTGTCTTT 140708 | || ||||| ||||||||||| | |||| || | || || || || || | || ||| Sbjct 9206 TCTTTGCTTTCACATTATCAATGGTATCA-CTGCTCTCGACCTCCAGGGTTATGGTTTTT 9148 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || ||||| || ||||| |||||| Sbjct 9147 CCGGTCAGGGTTTTCACGAAAATTTGCATT 9118 Score = 138 bits (152), Expect = 3e-27 Identities = 159/210 (76%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || | ||| ||||| || || ||||| | || || || |||||||| | Sbjct 9553 CAAG-TGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCCA 9495 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 ||||||||| |||||||| || ||||||||||||| ||||| || || ||||| | Sbjct 9494 ATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGA 9435 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAACTGTCTTT 140708 | || ||||| ||||||||||| | |||| || | || || || | || | || ||| Sbjct 9434 TCTTTGCTTTCACATTATCAATGGTATCA-CTGCTCTCGACCTCCAAGGTTATGGTTTTT 9376 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| | ||||| |||||||| |||||| Sbjct 9375 CCGGTCAAAGTTTTCACAAAAATTTGCATT 9346 >seq3991 Length=17808 Score = 141 bits (156), Expect = 3e-28 Identities = 160/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 140528 AACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTC 140587 ||| | |||||| || | ||||||||| ||||| || || | || || || |||||||| Sbjct 17047 AACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCTTC 17106 Query 140588 AAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTG 140647 | |||||| || |||||||| || ||||||||||||| ||||| || || ||||| Sbjct 17107 CAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGT 17166 Query 140648 AATTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAACTGTCT 140706 || || ||||| ||||||||||| | |||| || | || || || | || | || | Sbjct 17167 GATCTTTGCTTTCACATTATCAATGGTATCA-CTGCTCTCGACCTCCAAGGTTATGGTTT 17225 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||||| | ||||| |||||||| |||||| Sbjct 17226 TTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17257 Score = 136 bits (150), Expect = 1e-26 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 140528 AACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTC 140587 ||| | |||||| || | ||||||||| ||||| || || | || || || |||||||| Sbjct 17275 AACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCTTC 17334 Query 140588 AAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTG 140647 |||||||| || |||||||| || ||||| ||||||| || || || || ||||| Sbjct 17335 TAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTATCAGT 17394 Query 140648 AATTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAACTGTCT 140706 || || ||||| ||||||||||| | |||| || | || || || | || | || | Sbjct 17395 GATCTTTGCTTTCACATTATCAATGGTATCA-CTGCTCTCGACCTCCAAGGTTATGGTTT 17453 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||||| | ||||| |||||||| |||||| Sbjct 17454 TTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17485 Score = 127 bits (140), Expect = 6e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 140534 ATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTG 140593 ||| || || ||||| ||||| || || ||||| | || || || ||||| || ||||| Sbjct 12085 ATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCCTCGAGTTG 12144 Query 140594 TTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTT 140653 |||||| ||||| || | ||||| || || || || || || || || ||||| ||||| Sbjct 12145 TTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATTTT 12204 Query 140654 AGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || ||||| || | | |||||| ||| ||| | || | || ||||| || Sbjct 12205 CGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTTTTTCCCGT 12264 Query 140714 TAGTGTTTTTACAAAAATCTGCATT 140738 ||| ||||| ||||||||||||||| Sbjct 12265 TAGGGTTTTCACAAAAATCTGCATT 12289 >seq2970 Length=24236 Score = 141 bits (156), Expect = 3e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | || || || || |||||||| || || || || | || || || |||||| Sbjct 14252 AGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCT 14193 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | ||||||||| ||||| || || ||||||||||| || || || || || || ||| Sbjct 14192 TCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTCC 14133 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || ||||| || || ||||| || | | ||| || |||| ||| || || | || Sbjct 14132 TGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTT 14073 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||||| || ||||| ||||||||||||||| Sbjct 14072 TTTCCGGTCAGGGTTTTCACAAAAATCTGCATT 14040 Score = 140 bits (154), Expect = 1e-27 Identities = 157/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| ||||| || || ||||| | || || || |||||||| | Sbjct 14475 CAAG-TGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCTTCCA 14417 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 ||||||||| |||||||| | |||||||||||| || || || || || || ||||| | Sbjct 14416 ATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGA 14357 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 |||| || || ||||| || | | ||| || |||| ||| || || | || |||| Sbjct 14356 TTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTTTTTC 14297 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| || ||||| || ||||| |||||| Sbjct 14296 CGGTCAGAGTTTTCACGAAAATTTGCATT 14268 Score = 136 bits (150), Expect = 1e-26 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 140528 AACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTC 140587 ||| | |||||| || | ||||||||| || || ||||| | ||| || || |||||||| Sbjct 7854 AACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCATCTTC 7795 Query 140588 AAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTG 140647 |||||||| || |||||||| || ||||| ||||||| || || || || || || Sbjct 7794 GAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGT 7735 Query 140648 AATTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAACTGTCT 140706 || || ||||| ||||||||||| | |||| || | || || || | || | || | Sbjct 7734 GATCTTTGCTTTCACATTATCAATGGTATCA-CTGCTCTCGACCTCCAAGGTTATGGTTT 7676 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||||| | ||||| |||||||| |||||| Sbjct 7675 TTCCGGTCAAAGTTTTCACAAAAATTTGCATT 7644 Score = 131 bits (144), Expect = 5e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || | ||| ||||| || || ||||| | || ||||| |||||||| | Sbjct 8079 CAAG-TGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGA 8021 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 |||||||||| |||||||| || ||||| ||||||| ||||| ||||| || || | Sbjct 8020 GTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCAGTGA 7961 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || ||||| | ||||||||| | |||| || || || || || | || || | Sbjct 7960 TCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTTTTCC 7901 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| | ||||| |||||||| |||||| Sbjct 7900 CGGTCAAAGTTTTCACAAAAATTTGCATT 7872 Score = 129 bits (142), Expect = 2e-24 Identities = 157/210 (75%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || | ||| ||||| || || ||||| | || ||||| |||||||| | Sbjct 8307 CAAG-TGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGA 8249 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 ||||||| || |||||||| || ||||| ||||||| || || || || || || | Sbjct 8248 GTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGTGA 8189 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAACTGTCTTT 140708 | || ||||| ||||||||||| | |||| || | || || || | || | || ||| Sbjct 8188 TCTTTGCTTTCACATTATCAATGGTATCA-CTGCTCTCGACCTCCAAGGTTATGGTTTTT 8130 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| | ||||| |||||||| |||||| Sbjct 8129 CCGGTCAAAGTTTTCACAAAAATTTGCATT 8100 >seq27157 Length=1261 Score = 104 bits (114), Expect = 7e-17 Identities = 102/129 (79%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 |||||||||||||| |||||||| ||||| || |||||||| || || || ||||| ||| Sbjct 879 AGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCA 820 Query 140670 ATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 |||| || | ||| |||||||| | |||| ||||| ||||| || || || ||||| Sbjct 819 ATCGTGTC-GCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAA 761 Query 140729 AATCTGCAT 140737 || ||||| Sbjct 760 GATTTGCAT 752 >seq2297 Length=32998 Score = 100 bits (110), Expect = 9e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 140612 ACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAAT 140671 |||||||||||| |||||||| ||||| || |||||||| || || || ||||| ||||| Sbjct 3040 ACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCAAT 2981 Query 140672 CGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAA 140730 || || | ||| |||||||| | |||| ||||| ||||| || || || ||||| | Sbjct 2980 CGTGTC-GCTGGCCTCAACTTCCAAGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGA 2922 Query 140731 TCTGCAT 140737 | ||||| Sbjct 2921 TTTGCAT 2915 >seq2260 Length=26202 Score = 91.5 bits (100), Expect = 4e-13 Identities = 217/328 (66%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 349566 TGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTAC 349625 ||||| | | || || || | || ||| || | || || || || || || || || | Sbjct 13644 TGAAGAAGACAGCCGAGGCTTTCTTTGGTCAACCGGTCACGGAGGCGGTGATCACAGTCC 13585 Query 349626 CAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGT 349685 |||||||||| ||||| |||||| || || | || || || | ||||||||| Sbjct 13584 CAGCCTATTTCAATGACAGCCAGCGCCAGGCCACCAGGGACGCGGGGACCATTGCGGGTC 13525 Query 349686 TAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATA 349745 | ||||| || | || || || ||||| || || || || || || || || || || | Sbjct 13524 TGAATGTGCTCCGGATCATCAACGAACCGACGGCCGCCGCCATCGCCTACGGACTGGACA 13465 Query 349746 AAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATG 349805 || | | | || | || | || || || ||||| || || || || | | | Sbjct 13464 TAAAGGGCCAGGGCGAGCGACATGTGCTGATCTTCGATTTGGGCGGCGGCACACTCGGAG 13405 Query 349806 TATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACAC 349865 | || | || ||| |||| | || |||| ||| || ||| | || || || || | | Sbjct 13404 TGTCCATCCTGACAATTGAGAACGGCATTTATGACGTGAAATCGACGGCCGGAGACAACC 13345 Query 349866 ATCTTGGTGGAGAAGATTTTGATAATCG 349893 ||||||| || ||||| ||||| || || Sbjct 13344 ATCTTGGCGGCGAAGACTTTGACAACCG 13317 >seq6138 Length=12267 Score = 87.8 bits (96), Expect = 5e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| |||||||| |||||||||||||| || || ||||| || || || || || || Sbjct 9202 AGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCG 9261 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | ||| || || || ||||| || | ||||| || || || ||||| || ||| Sbjct 9262 ATGGTGTCACTTGCCTCGACCTCAAGAGTTATGGTCTTGCCAGTGAGAGTTTTGACGAAA 9321 Query 140730 ATCTGCAT 140737 || ||||| Sbjct 9322 ATTTGCAT 9329 >seq4044 Length=16623 Score = 87.8 bits (96), Expect = 5e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 67944 CTATCATCACGGTGAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGT 68003 |||||||||||| ||||| | | | || ||||||| |||||| ||||||||||| Sbjct 13027 CTATCATCACGGCGAAGCATCTCTGATGTCCACAATTGTCAATTTAGCACAGAATTTTGT 12968 Query 68004 TGGATCAAATAATATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGG 68063 |||||||| ||||| ||| | || || | |||||||| || ||| || | | || Sbjct 12967 CGGATCAAACAATATCAATCTGCTTTTGCCTATTGGTCAATTCGGTACTCGACTGCAAGG 12908 Query 68064 AGGAAAAGATGCTGCATC 68081 ||||||||| | ||||| Sbjct 12907 AGGAAAAGACTCCGCATC 12890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513302787846575