Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5492 105 7e-18 seq12421 98.7 1e-15 seq2518 98.7 1e-15 seq615 93.3 5e-14 >seq5492 Length=8422 Score = 105 bits (116), Expect = 7e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 19798 CGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAA 19857 ||| |||||||| ||||||||| ||||||||||| ||| |||||| || ||| | Sbjct 5609 CGAAACCGGCACCCCGTACATGGTGTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCA 5668 Query 19858 GAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCC 19917 ||| |||| | ||||||| ||||||||||||||||| ||||| ||| || ||| Sbjct 5669 AAACCTCGGGACCATCAAGTGCTCCAACCTGTGTACTGAGATCATCGAGTACTCTTCGCC 5728 Query 19918 GGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 ||||||||| ||||| || |||| ||| Sbjct 5729 CACCGAGACTGCGGTGTGCAACTTGGCCTCC 5759 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| ||||||||| || |||||| || ||| ||||||||| || || ||| Sbjct 5758 GAGGCCAAGTTGCACACCGCAGTCTCGGTGGGCGAAGAGTACTCGATGATCTCAGTACAC 5699 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || || |||||||||| |||| ||| | |||||| ||| ||| || |||||| Sbjct 5698 AGGTTGGAGCACTTGATGGTCCCGAGGTTTTGCTGGTTCGACTTGCGGTTGCACGCGTCC 5639 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||| ||||||||| || ||||| || Sbjct 5638 TTGTACACCATGTACGGGGTGCCGGTTTC 5610 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 ||||| | |||||| |||| |||||||| ||||||||||| || || ||||| ||| Sbjct 6600 CACGGAGTGCGCAACAGTCTGCTGGTCGCGCCGATGCCGACCGCGTCCACGGCCCAAATC 6659 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 | || ||||||||| | |||||||| ||||| | ||||||||| Sbjct 6660 CTCGGCAACAACGAGTCCTTCGAGCCATACACATCAAACATCTAC 6704 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||| | ||||| |||||||| | ||||||||| || | ||| ||||| || || Sbjct 6704 GTAGATGTTTGATGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGA 6645 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGA 78621 ||||||||||| || |||||||| ||| Sbjct 6644 CGCGGTCGGCATCGGCGCGACCAGCAGA 6617 >seq12421 Length=2797 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| ||||||||| || |||||| || ||| ||||||||| || |||||| Sbjct 1204 GAGGCCAAGTTGCACACTGCGGTCTCGGTGGGCGAAGAGTACTCGATGATCTCAGTGCAC 1263 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || || |||||||||| |||| ||||| |||||| ||| ||| || |||||| Sbjct 1264 AGGTTGGAGCACTTGATGGTCCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCC 1323 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||| ||| || || || |||||||| Sbjct 1324 TTGTACACCATATATGGGGTGCCGGTCTC 1352 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 19798 CGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAA 19857 |||||||||||| || || ||| ||||||||||| ||| |||||| || ||| | Sbjct 1353 CGAGACCGGCACCCCATATATGGTGTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCA 1294 Query 19858 GAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCC 19917 |||| |||| | ||||||| ||||||||||| ||||| ||||| ||| || ||| Sbjct 1293 GAACCTCGGGACCATCAAGTGCTCCAACCTGTGCACTGAGATCATCGAGTACTCTTCGCC 1234 Query 19918 GGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 |||||| || ||||| || |||| ||| Sbjct 1233 CACCGAGACCGCAGTGTGCAACTTGGCCTCC 1203 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 |||||| | |||||| |||| || ||||| ||||||||||| || || ||||| ||| Sbjct 266 CACGGGGTGCGCAACAGTCTGCTGGTTGCGCCGATGCCGACCGCGTCCACGGCCCAAATC 207 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 | || ||||||||| | || ||||| ||||| ||||||||||| Sbjct 206 CTCGGCAACAACGAGTCCTTTGAGCCATACACATCCAACATCTAC 162 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||||| ||||| ||||| || | ||||||||| || | ||| ||||| || || Sbjct 162 GTAGATGTTGGATGTGTATGGCTCAAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTGGA 221 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGA 78621 ||||||||||| || || ||||| ||| Sbjct 222 CGCGGTCGGCATCGGCGCAACCAGCAGA 249 >seq2518 Length=16751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| ||||||||| || |||||| || ||| ||||||||| || |||||| Sbjct 10564 GAGGCCAAGTTGCACACTGCGGTCTCGGTGGGCGAAGAGTACTCGATGATCTCGGTGCAC 10623 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || || |||||||||| |||| |||| |||||| ||| ||| || |||||| Sbjct 10624 AGGTTGGAGCACTTGATGGTCCCGAGATTCTGCTGGTTCGACTTGCGGTTGCACGCGTCC 10683 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||| ||||||||| || ||||| || Sbjct 10684 TTGTACACCATGTACGGGGTGCCGGTTTC 10712 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 19798 CGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAA 19857 ||| |||||||| ||||||||| ||||||||||| ||| |||||| || ||| | Sbjct 10713 CGAAACCGGCACCCCGTACATGGTGTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCA 10654 Query 19858 GAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCC 19917 ||| |||| | ||||||| ||||||||||| || || ||||| ||| || ||| Sbjct 10653 GAATCTCGGGACCATCAAGTGCTCCAACCTGTGCACCGAGATCATCGAGTACTCTTCGCC 10594 Query 19918 GGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 |||||| || ||||| || |||| ||| Sbjct 10593 CACCGAGACCGCAGTGTGCAACTTGGCCTCC 10563 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 ||||| | |||||| |||| |||||||| ||||| ||||| || || ||||| ||| Sbjct 9697 CACGGAGTGCGCAACAGTCTGCTGGTCGCGCCGATGCCAACCGCGTCAACGGCCCAAATC 9638 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 | || ||||||||| | |||||||| ||||| ||||||||||| Sbjct 9637 CTCGGCAACAACGAGTCCTTCGAGCCATACACATCCAACATCTAC 9593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||||| ||||| |||||||| | ||||||||| || | ||| ||||| || || Sbjct 9593 GTAGATGTTGGATGTGTATGGCTCGAAGGACTCGTTGTTGCCGAGGATTTGGGCCGTTGA 9652 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGA 78621 ||||| ||||| || |||||||| ||| Sbjct 9653 CGCGGTTGGCATCGGCGCGACCAGCAGA 9680 >seq615 Length=100005 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 19798 CGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAA 19857 ||| || ||||| ||||||||| ||||||||||| ||| |||||| || ||| | Sbjct 8057 CGAAACTGGCACCCCGTACATGGTGTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCA 7998 Query 19858 GAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCC 19917 |||| |||| | ||||||| ||||||||||| ||||| ||||| ||| || ||| Sbjct 7997 GAACCTCGGGACCATCAAGTGCTCCAACCTGTGCACTGAGATCATTGAGTACTCTTCGCC 7938 Query 19918 GGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 |||||| || || || || |||| ||| Sbjct 7937 CACCGAGACCGCAGTTTGCAACTTGGCCTCC 7907 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| |||||| || || |||||| || ||| ||| ||||| || |||||| Sbjct 7908 GAGGCCAAGTTGCAAACTGCGGTCTCGGTGGGCGAAGAGTACTCAATGATCTCAGTGCAC 7967 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || || |||||||||| |||| ||||| |||||| ||| ||| || |||||| Sbjct 7968 AGGTTGGAGCACTTGATGGTCCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCC 8027 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||| ||||||||| || || || || Sbjct 8028 TTGTACACCATGTACGGGGTGCCAGTTTC 8056 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 |||||| | |||||| |||| || ||||| ||||||||||| || || ||||| ||| Sbjct 5722 CACGGGGTGCGCAACAGTCTGCTGGTGGCGCCGATGCCGACCGCGTCCACGGCCCAAATC 5663 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 | || ||||||||| | |||||||| ||||| | || || ||| Sbjct 5662 CTCGGCAACAACGAGTCCTTCGAGCCATACACATCAAATATTTAC 5618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547835544306000