Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2518 102 9e-17 seq12421 93.3 5e-14 seq5492 93.3 5e-14 seq615 87.8 2e-12 >seq2518 Length=16751 Score = 102 bits (112), Expect = 9e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| ||||| || ||||| |||||||||||||| ||||| || ||| | |||||| Sbjct 9688 CGCAACAGTCTGCTGGTCGCGCCGATGCCAACCGCGTCAACGGCCCAAATCCTCGGCAAC 9629 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||| | |||||||| ||||| ||||||||||| Sbjct 9628 AACGAGTCCTTCGAGCCATACACATCCAACATCTAC 9593 >seq12421 Length=2797 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| ||||| || ||||| ||||| |||||||| ||||| || ||| | |||||| Sbjct 257 CGCAACAGTCTGCTGGTTGCGCCGATGCCGACCGCGTCCACGGCCCAAATCCTCGGCAAC 198 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||| | || ||||| ||||| ||||||||||| Sbjct 197 AACGAGTCCTTTGAGCCATACACATCCAACATCTAC 162 >seq5492 Length=8422 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| ||||| || ||||| ||||| |||||||| ||||| || ||| | |||||| Sbjct 6609 CGCAACAGTCTGCTGGTCGCGCCGATGCCGACCGCGTCCACGGCCCAAATCCTCGGCAAC 6668 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||| | |||||||| ||||| | ||||||||| Sbjct 6669 AACGAGTCCTTCGAGCCATACACATCAAACATCTAC 6704 >seq615 Length=100005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| ||||| |||||||| ||||| |||||||| ||||| || ||| | |||||| Sbjct 5713 CGCAACAGTCTGCTGGTGGCGCCGATGCCGACCGCGTCCACGGCCCAAATCCTCGGCAAC 5654 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||| | |||||||| ||||| | || || ||| Sbjct 5653 AACGAGTCCTTCGAGCCATACACATCAAATATTTAC 5618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546528388895000