Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2970 156 3e-33 seq3991 141 6e-29 seq1539 132 3e-26 seq2067 100 2e-16 seq10184 91.5 9e-14 >seq2970 Length=24236 Score = 156 bits (172), Expect = 3e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || ||||| ||||| ||||| || ||||||||| ||||| ||||| | Sbjct 8099 CCTCCCCTGAGGCGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 8040 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| |||||||| || ||||| || | || ||||| || | ||| Sbjct 8039 AAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGA 7980 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||||||||| | ||||| || ||||||||| ||||| || Sbjct 7979 ATACCTTCCTTGTCAGTGATCTTT-GCTTTAATATTATCAATTGTGTCAGTACTCTCGAC 7921 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 7920 CTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 152 bits (168), Expect = 3e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || ||||| ||||| || || || ||||||||| ||||| ||||| | Sbjct 8327 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 8268 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| |||||||| || ||||| || | || ||||| || | ||| Sbjct 8267 AAAGTTCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGT 8208 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| |||| ||| || || ||| || || |||||| || Sbjct 8207 ATGCCCTCCTTGTCAGTGATC-TTTGCTTTCACATTATCAATGGTATCACTGCTCTCGAC 8149 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 8148 CTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 150 bits (166), Expect = 1e-31 Identities = 174/230 (76%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || || || ||||| |||||||| || || ||| ||||| ||||| ||||| | Sbjct 7871 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCT 7812 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | ||||| |||||||| || ||||| || | || ||||| || | || Sbjct 7811 AAAGTG--CGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 7754 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||||| |||| ||| || || ||| || || |||||| Sbjct 7753 GTATGCCCTCCTTGTCAGTGATC-TTTGCTTTCACATTATCAATGGTATCACTGCTCTCG 7695 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| |||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 7694 ACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 120 bits (132), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| ||||| ||||| ||||| || ||||||||| ||||| ||||| | Sbjct 14495 CCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 14436 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||| || ||||| || ||||| || || ||||| || Sbjct 14435 AAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGG 14376 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCG--CTCTCCA 34657 | ||||||||||| ||| ||||| || || || | || | || || || Sbjct 14375 ATACCCTCCTTGTCCTGGAT-TTTTGCCTTCAC-ATTGTCTACAGTATCCGAACTTTCAC 14318 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| |||||| ||||| ||||| | |||||||| ||||| ||||| Sbjct 14317 ATTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || || || |||| ||||| ||||| || || ||||| ||||| || || | Sbjct 14267 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCC 14208 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | ||||| | |||||| || ||||| || | || || || ||||| | Sbjct 14207 AAAGTG--CGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTG 14150 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCG--CTCTC 34655 | | ||||||||||| ||| ||||| || || || | || | || || || Sbjct 14149 GGATACCCTCCTTGTCCTGGAT-TTTTGCCTTCAC-ATTGTCTACAGTATCCGAACTTTC 14092 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| |||||| ||||| ||||| | |||||||||||||||||||| Sbjct 14091 ACATTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCAT 14041 >seq3991 Length=17808 Score = 141 bits (156), Expect = 6e-29 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || || || ||||| |||||||| || ||| ||| ||||| || || || || | Sbjct 17258 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 17317 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | ||||| |||||||| || ||||| || | || ||||| || | || Sbjct 17318 AAAGTG--CGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCG 17375 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCC 34656 | | |||||||| || ||||||||| | ||| || || ||| || || |||||| Sbjct 17376 GTATGCCCTCCTTATCAGTGATCTTT-GCTTTCACATTATCAATGGTATCACTGCTCTCG 17434 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| |||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 17435 ACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17484 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || ||||||||||||||||| || ||||||||| ||||| ||||| | Sbjct 12062 CCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 12121 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || |||||||| || ||||| || || || ||||||||||| || Sbjct 12122 AAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGG 12181 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | || || | | || || || || Sbjct 12182 ATACCCTCCTTGTCCTGGAT-TTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCA 12240 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| |||||| ||||| || |||| |||||||||||||||||||| Sbjct 12241 TTCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || ||||| |||||||| || ||| ||| ||||| || || || || | Sbjct 17030 CCTCCCCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 17089 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||| || ||||| || | || || || || | || Sbjct 17090 AAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGA 17149 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || ||||||||| | ||| || || ||| || || |||||| || Sbjct 17150 ATGCCCTCCTTATCAGTGATCTTT-GCTTTCACATTATCAATGGTATCACTGCTCTCGAC 17208 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 17209 CTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 17256 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || |||| ||||| ||||| || ||||||||| ||||| ||||| | Sbjct 11834 CCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 11893 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | |||||| || ||||| || | || || ||||||||||| Sbjct 11894 AAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGG 11953 Query 34600 ACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 11954 ATACCCTCCTTGTC 11967 >seq1539 Length=61058 Score = 132 bits (146), Expect = 3e-26 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || || || ||||| ||||| || || || ||||||||| ||||| ||||| | Sbjct 9573 CCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCC 9514 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | ||||| | |||||| || ||||| || | || || || || | | Sbjct 9513 AAAGTG--CGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTG 9456 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCC 34656 | | |||||||| || ||||||||| | ||| || || ||| || || |||||| Sbjct 9455 GAATGCCCTCCTTATCAGTGATCTTT-GCTTTCACATTATCAATGGTATCACTGCTCTCG 9397 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| |||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 9396 ACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || || || |||||||||||||| || ||| ||| ||||| || || || || | Sbjct 9801 CCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCC 9742 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | ||||| |||||||| || ||||| || | || || || || | | Sbjct 9741 AAAGTG--CGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTG 9684 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCC 34656 | | |||||||| || |||||| |||| ||| || || ||| || || |||||| Sbjct 9683 GAATGCCCTCCTTATCAGTGATC-TTTGCTTTCACATTATCAATGGTATCACTGCTCTCG 9625 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| ||||| ||||| ||||| | |||||||| ||||| ||||| Sbjct 9624 ACCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9575 >seq2067 Length=34267 Score = 100 bits (110), Expect = 2e-16 Identities = 138/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 34522 TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAA 34581 |||||||| || || | || || || |||| || |||||||| ||||| || || | Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 34582 CGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAAT 34640 ||||| ||||||||||| | ||||||||||| |||| || | || ||| | | Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCCAC 29698 Query 34641 TGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAA 34699 ||| || |||| |||||| |||| ||| ||||| || ||||| | ||| ||||| || | Sbjct 29699 TGTATCGTTCG-ACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGA 29757 Query 34700 TCTGCATG 34707 | |||||| Sbjct 29758 TTTGCATG 29765 >seq10184 Length=3342 Score = 91.5 bits (100), Expect = 9e-14 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 34522 TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAA 34581 |||||||| || || | || || || |||| || |||||||| ||||| || || | Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 34582 CGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAAT 34640 ||||| ||||||||||| | || |||||||| |||| || | || ||| | | Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCCAC 906 Query 34641 TGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAA 34699 ||||| |||| |||||| |||| ||| ||||| || ||||| | || ||||| || | Sbjct 907 CGTGTCGTTCG-ACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGA 965 Query 34700 TCTGCATG 34707 | |||||| Sbjct 966 TTTGCATG 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314344009522325