Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2970 118 9e-22 seq10184 102 7e-17 seq3991 98.7 9e-16 seq6138 91.5 1e-13 seq2067 89.7 4e-13 seq1539 89.7 4e-13 seq8832 84.2 2e-11 >seq2970 Length=24236 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||||||||| || | || || || ||| ||| || Sbjct 14269 ATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTCG 14328 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | | || | || || |||||| || ||||| || || || ||||| ||||| Sbjct 14329 GATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCAG 14388 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||||||||| | || | ||||||||||| Sbjct 14389 CAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACAAC 14448 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || ||||||||||| ||| | || ||||||||||| Sbjct 14449 ATCCAAAAGGAGTCAACCCTCCACTTGGTTTTGCG 14483 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| ||||||| || | || || || || || || | Sbjct 7873 ATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTACT 7932 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | | ||| ||| || ||||| ||||| || || | |||||| Sbjct 7933 GACACAATTGATAATATTAAAGCAAAGATCACTGACAAGGAAGGTATTCCGACTGATCAA 7992 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTACAA 27166 || || | || | || || |||||| | ||||| | ||| | || |||||||||| Sbjct 7993 CAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGC-CGAACTTTGGCCGATTACAA 8051 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||| ||||||||| | ||| | || ||||||||||| Sbjct 8052 CATCCAAAAGGAGGCAACCCTCCACTTGGTTTTGCG 8087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||||||| || | || || || ||| ||| || Sbjct 14041 ATGCAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTCG 14100 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | | || | || || |||||| || ||||| || || || ||||| ||||| Sbjct 14101 GATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCAG 14160 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || || |||||||||||||| | || | |||| |||||| Sbjct 14161 CAACGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTACAAC 14220 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || ||||| || || ||| | || |||||| |||| Sbjct 14221 ATCCAAAAAGAATCAACCCTCCACTTGGTTCTGCG 14255 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAA--CCGT 27045 ||||| || ||||| |||||| ||||||| || | || || | || || || | || Sbjct 8101 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 8160 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 || | ||||| | || ||| ||| || ||||| || |||||||| | |||| Sbjct 8161 --GATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATC 8218 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTAC 27164 |||| || | || | || || |||||| | ||||| | ||| | || |||||||| Sbjct 8219 AACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGC-CGAACTTTGGCCGATTAC 8277 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||| ||||||||| | ||| | || ||||||||||| Sbjct 8278 AACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 8315 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAA--CCGT 27045 ||||| || ||||| |||||| ||||||| || | || || | || || || | || Sbjct 7645 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 7704 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 || | ||||| | || ||| ||| || ||||| || |||||||| | |||| Sbjct 7705 --GATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATC 7762 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| || | || | || || |||||| | ||||| | || | ||||||||| Sbjct 7763 AACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTACA 7822 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 |||| ||||| ||| | ||| | |||||||||||||| Sbjct 7823 ACATCCAAAAAGAGGCAACCCTTCATTTGGTTTTGCG 7859 >seq10184 Length=3342 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 ||||||||| || || || || || |||||||| ||| | || || | || ||||| | Sbjct 976 CGCCATGCAAATCTTCGTGAAGACACTGACCGGGAAGACGATCACCATGGATGTGGAGTC 917 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | |||| || | |||| || || || || || ||||| |||||||| || || || Sbjct 916 GAACGACACGGTGGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGA 857 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||||||| |||| ||| | ||| | |||| || Sbjct 856 CCAGCAGCGACTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGGCCGACTA 797 Query 27164 CAACATTCA 27172 ||||||||| Sbjct 796 CAACATTCA 788 >seq3991 Length=17808 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||||||||| || || |||| || || ||| ||| || Sbjct 12060 ATGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGTGAAAGTTCT 12001 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | | || | || || ||||| || ||||| || || || || || || || Sbjct 12000 GATACTGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCAG 11941 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTACAA 27166 || || | || | || || |||||||||||||| | ||| | || |||||||||| Sbjct 11940 CAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGC-CGAACTTTGGCCGATTACAA 11882 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||| ||||||||||| ||| | || |||||| |||| Sbjct 11881 CATCCAAAAGGAGTCAACCCTCCACTTGGTTCTGCG 11846 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTG-GAACCGTC 27046 |||||||| ||||| ||||| || || || || | || || |||| | || ||| || Sbjct 12288 ATGCAGATTTTTGTGAAAACCCTAACGGGAAAAACCATAAC-CTTGGAATGCGAAAGTTC 12230 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | | || | || || ||||| || ||||| || || || ||||| || || Sbjct 12229 TGATACCGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCACCGGACCA 12170 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || || || | || || |||||| | || || || || | |||||||||| Sbjct 12169 ACAACGGTTGATTTTTGCAGGAAAACAACTCGAGGATGGTCGTACTTTGGCCGATTACAA 12110 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||| ||||||||||| ||| | |||||||| ||||| Sbjct 12109 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCG 12074 >seq6138 Length=12267 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||||||||| ||||| | || ||||| || || || | | Sbjct 8596 ATGCAGATTTTCGTCAAAACTCTGACAGGCAAAACCATCACTCTGGAGGTCGAGGCCAGC 8537 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || || |||||||||||||| || || |||||| Sbjct 8536 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCGCCGGATCAA 8477 Query 27108 CAGCG 27112 ||||| Sbjct 8476 CAGCG 8472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||| ||| | || ||||| || || || | | Sbjct 9053 ATGCAGATCTTCGTCAAGACTTTGACCGGGAAGACCATCACTCTGGAGGTCGAGGCTAGC 8994 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || || |||||||||||||| || || ||||| Sbjct 8993 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCGCCTGATCAG 8934 Query 27108 CAGCGTTTAATATA 27121 ||||| || |||| Sbjct 8933 CAGCGCTTGGTATA 8920 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 |||||||||| || || || |||||||| || |||||| | || |||||||| || || Sbjct 9334 ACGCCATGCAAATTTTCGTCAAAACTCTCACTGGCAAGACCATAACTCTTGAGGTCGAGG 9275 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 | ||| | || || | ||||| || ||||||||||| ||||| || || || | Sbjct 9274 CAAGTGACACCATCGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATTCCTCCGG 9215 Query 27103 ATCAACAGCGT 27113 |||| |||||| Sbjct 9214 ATCAGCAGCGT 9204 >seq2067 Length=34267 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 ||||||||| || || || || || |||||||| ||| | || || | || ||||| | Sbjct 29768 CGCCATGCAAATCTTCGTGAAGACGCTGACCGGGAAGACGATCACCATGGATGTGGAGTC 29709 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | ||| | | |||| || || || || || ||||| || ||||| || || || Sbjct 29708 GAACGATACAGTGGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 29649 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||||||| |||| ||| | ||| | |||| || Sbjct 29648 CCAGCAGCGACTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGGCCGACTA 29589 Query 27164 CAACATTCA 27172 ||||||||| Sbjct 29588 CAACATTCA 29580 >seq1539 Length=61058 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAA--CCGT 27045 ||||| || ||||| |||||| ||||||| || | || || | || || || | || Sbjct 9347 ATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAGT 9406 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 || | ||||| | || ||| ||| || || || || ||||| ||| | |||| Sbjct 9407 --GATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATC 9464 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | || || | || | || || |||||||||||||| | || | ||||||||| Sbjct 9465 AGCAACGCCTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTACA 9524 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 |||| ||||||||| | ||| | || ||||||||||| Sbjct 9525 ACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9561 >seq8832 Length=4481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 ||||||||| || || || || || |||||||| ||| | || || || || |||| | Sbjct 790 CGCCATGCAAATCTTCGTGAAGACGCTGACCGGGAAGACGATCACACTGGACATGGAGTC 731 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | |||| || | |||| || || || || || || || || ||||| || || || Sbjct 730 GAACGACACGGTGGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGA 671 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || || || | || | ||||||||||||| |||| || | ||| | |||| || Sbjct 670 CCAGCAACGACTCATCTTCGCCGGCAAACAACTGGAGGATGGACGCACCCTGGCCGACTA 611 Query 27164 CAACATTCA 27172 ||||||||| Sbjct 610 CAACATTCA 602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434371897848000