Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2970 122 6e-23 seq1539 122 6e-23 seq3991 118 8e-22 >seq2970 Length=24236 Score = 122 bits (134), Expect = 6e-23 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||||||| | || |||||| || || | || ||||| || || Sbjct 7872 AATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTAC 7931 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| | ||| ||| || | ||||| |||||| |||||| || Sbjct 7932 TGACACAATTGATAATA--TTAAAGCAAAGATCACTGACAAGGAAGGTATTCCGACTGAT 7989 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| | || ||||| ||||||||| | || || | || | ||| |||||||| Sbjct 7990 CAACAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTAC 8049 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||||||| ||| || | || ||||||||||| Sbjct 8050 AACATCCAAAAGGAGGCAACCCTCCACTTGGTTTTGCG 8087 Score = 116 bits (128), Expect = 3e-21 Identities = 160/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGA-TGTCGAAAGCA 27847 |||||||||||| ||||||||||| || || ||| || || | || ||| ||||| Sbjct 14268 AATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGT-GAAAGTT 14326 Query 27848 CCGACGATGTA--CAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || |||| |||| || || |||||| ||||| || ||| | || ||| Sbjct 14327 CGGATACTGTAGACAAT--GTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGA 14384 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 |||||||| || || ||||| |||||||||||||| || | || | ||| ||||||| Sbjct 14385 TCAGCAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTA 14444 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||||||||||| ||| || | || ||||||||||| Sbjct 14445 CAACATCCAAAAGGAGTCAACCCTCCACTTGGTTTTGCG 14483 Score = 113 bits (124), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||||||| | || || ||| || || | || ||||| |||| Sbjct 7644 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 7703 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||| || | ||||| || || | |||| || Sbjct 7704 TGATACCATTGATAAT--GTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGAT 7761 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| | || ||||| || |||||| | || || | |||| || |||||||| Sbjct 7762 CAACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTAC 7821 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||||||||||| || | |||||||||||||| Sbjct 7822 AACATCCAAAAAGAGGCAACCCTTCATTTGGTTTTGCG 7859 Score = 113 bits (124), Expect = 3e-20 Identities = 159/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGA-TGTCGAAAGCA 27847 |||||| |||||||||||||| || || || ||| || || | || ||| ||||| Sbjct 14040 AATGCAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGT-GAAAGTT 14098 Query 27848 CCGACGATGTA--CAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || |||| |||| || || |||||| ||||| || ||| | || ||| Sbjct 14099 CGGATACTGTAGACAAT--GTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGA 14156 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 ||||||||| | |||||||| |||||||||||||| || | |||| ||| |||| || Sbjct 14157 TCAGCAACGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTA 14216 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||||||||||| || | || |||||| |||| Sbjct 14217 CAACATCCAAAAAGAATCAACCCTCCACTTGGTTCTGCG 14255 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||||||| | || || ||| || || | || ||||| |||| Sbjct 8100 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 8159 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||| || | ||||| || || | |||| || Sbjct 8160 TGATACCATTGATAAT--GTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGAT 8217 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| | || ||||| || |||||| | || || | || | ||| |||||||| Sbjct 8218 CAACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTAC 8277 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||||||| ||| || | || ||||||||||| Sbjct 8278 AACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 8315 >seq1539 Length=61058 Score = 122 bits (134), Expect = 6e-23 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||||||| | || || ||| || || | || ||||| |||| Sbjct 9346 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 9405 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||| || | || || || || |||| | || Sbjct 9406 TGATACCATTGATAAT--GTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGAT 9463 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| | || ||||| |||||||||||||| || | |||| ||| |||||||| Sbjct 9464 CAGCAACGCCTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTAC 9523 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||||||| ||| || | || ||||||||||| Sbjct 9524 AACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9561 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| |||||||| || || || ||| || || | || ||||| |||| Sbjct 9118 AATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAGGTCGAGAGCAG 9177 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||| || | || || || || |||| | || Sbjct 9178 TGATACCATTGATAAT--GTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGAT 9235 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| | || ||||| ||||||||| | || || | |||| ||| |||||||| Sbjct 9236 CAGCAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGATTAC 9295 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||||||| ||| || | || ||||||||||| Sbjct 9296 AACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9333 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| |||||||| || || || ||| || || | || ||||| |||| Sbjct 9574 AATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACTCTGGAGGTCGAGAGCAG 9633 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||| || | || || || || |||| | || Sbjct 9634 TGATACCATTGATAAT--GTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGAT 9691 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| | || ||||| ||||||||| | || || | |||| ||| |||| ||| Sbjct 9692 CAGCAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGACTAC 9751 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 || |||||||||||| ||| | |||||||| ||||| Sbjct 9752 AATATCCAAAAAGAGGCCACCCTTCATTTGGTGTTGCG 9789 >seq3991 Length=17808 Score = 118 bits (130), Expect = 8e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||||||| | || || ||| || || | || ||||| |||| Sbjct 17257 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 17198 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||| || | || || || || |||| | || Sbjct 17197 TGATACCATTGATAAT--GTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGAT 17140 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| | || ||||| || ||||||||||| || | || | ||| |||| ||| Sbjct 17139 CAGCAACGCCTGATCTTTGCGGGGAAACAATTGGAAGATGGCCGTACTTTGGCCGACTAC 17080 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 || |||||||||||| ||| | |||||||||||||| Sbjct 17079 AATATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCG 17042 Score = 116 bits (128), Expect = 3e-21 Identities = 160/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGA-TGTCGAAAGCA 27847 |||||||||||| || |||||||| ||||| ||| ||| || | || ||| ||||| Sbjct 12061 AATGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGT-GAAAGTT 12003 Query 27848 CCGACGATGTA--CAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || |||| |||| || || ||||| ||||| || ||| | ||| ||| Sbjct 12002 CTGATACTGTAGACAAT--GTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGA 11945 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 |||||||| | |||||||| |||||||||||||| || | || | ||| ||||||| Sbjct 11944 CCAGCAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTA 11885 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||||||||||| ||| || | || |||||| |||| Sbjct 11884 CAACATCCAAAAGGAGTCAACCCTCCACTTGGTTCTGCG 11846 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||||||| | || || ||| || || | || ||||| |||| Sbjct 17485 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 17426 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||| || | || || || || | |||| || Sbjct 17425 TGATACCATTGATAAT--GTGAAAGCAAAGATCACTGATAAGGAGGGCATACCGACTGAT 17368 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| | || ||||| || |||||| | || || | |||| ||| |||| ||| Sbjct 17367 CAACAACGCCTGATCTTTGCGGGGAAACAACTAGAAGATGGCCGCACTTTGGCCGACTAC 17308 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 || |||||||||||| ||| | |||||||||||||| Sbjct 17307 AATATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCG 17270 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||||||||| || || || ||| || || | || |||||| | Sbjct 12289 AATGCAGATTTTTGTGAAAACCCTAACGGGAAAAACCATAACCTTGGAATGCGAAAGTTC 12230 Query 27849 CGACGATGTA--CAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || ||| |||| || || ||||| ||||| || ||| | || ||| Sbjct 12229 TGATACCGTAGACAAT--GTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCACCGGAC 12172 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || |||||||| |||||||| ||||||||| | || || | || | ||| |||||||| Sbjct 12171 CAACAACGGTTGATTTTTGCAGGAAAACAACTCGAGGATGGTCGTACTTTGGCCGATTAC 12112 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||||||| ||| || | |||||||| ||||| Sbjct 12111 AACATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCG 12074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355426415736675