Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2067 118 9e-22 seq1539 118 9e-22 seq10184 113 4e-20 seq8832 104 2e-17 >seq2067 Length=34267 Score = 118 bits (130), Expect = 9e-22 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 39100 TGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGA 39159 || || || || ||||| || || ||| |||| || || |||||||| || || || || Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 39160 CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 ||||||||||| | || | || ||| |||||| ||| || || | || |||| Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACT 29699 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 |||||| |||||||||| |||| ||||| | || || |||||||| || || |||||| Sbjct 29700 GTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 29759 Query 39280 TGCAT 39284 ||||| Sbjct 29760 TGCAT 29764 >seq1539 Length=61058 Score = 118 bits (130), Expect = 9e-22 Identities = 173/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||||| || | ||| ||||||||||| || ||| |||||||| Sbjct 9816 ACGAAAATTTG--CATTCCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTT 9759 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| || ||||| | || || | || || || ||||| |||||||| || || | Sbjct 9758 GGATATTGTAGTCGGCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGC 9699 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | ||||| || || || | || ||| || || |||| || ||| | | | | | Sbjct 9698 GTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGG 9639 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| || ||| || |||| || || ||||||| ||||| ||||| || || |||| Sbjct 9638 TATCACTGCTCTCGACCTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTT 9579 Query 39281 GCAT 39284 |||| Sbjct 9578 GCAT 9575 >seq10184 Length=3342 Score = 113 bits (124), Expect = 4e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 39100 TGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGA 39159 || || || || ||||| || || ||| |||| || || |||||||| || || ||||| Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 39160 CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 ||||||||||| | || | || || |||||| ||| || || | || ||||| Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 || ||| |||||||||| |||| ||||| | || || ||||| || || || |||||| Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 39280 TGCAT 39284 ||||| Sbjct 968 TGCAT 972 >seq8832 Length=4481 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 39100 TGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGA 39159 || || || || ||||| || || ||| | || || || |||||||| || || || || Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 39160 CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 || |||||||| | || | || ||| || ||| ||| || || | || ||||| Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACC 721 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 || ||| ||||||||| ||||| ||||| | || || |||||||| || || |||||| Sbjct 722 GTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 781 Query 39280 TGCAT 39284 ||||| Sbjct 782 TGCAT 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429019342879325