Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2970 131 1e-25 seq1539 118 7e-22 seq3991 109 4e-19 seq10184 91.5 1e-13 seq6138 82.4 5e-11 seq2067 82.4 5e-11 >seq2970 Length=24236 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| | || |||||||| || || | || || || || Sbjct 7644 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 7703 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| |||| | | ||||||| || || ||||| | |||| Sbjct 7704 TGATACCATTGATAATGTGAAAGCAAAGA-TCACTGACAAGGAGGGCATACCGACTGATC 7762 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || | || ||||| || |||||||| ||||| | |||||||||| |||||||| Sbjct 7763 AACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTACA 7822 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| ||||||||| | || | ||||| ||||| Sbjct 7823 ACATCCAAAAAGAGGCAACCCTTCATTTGGTTTT 7856 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| | || || ||||| || || || || || || || Sbjct 7872 AATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTAC 7931 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||||||||| |||| | | ||||||| |||||| | ||| | |||| Sbjct 7932 TGACACAATTGATAATATTAAAGCAAAGA-TCACTGACAAGGAAGGTATTCCGACTGATC 7990 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || | || ||||| || |||||||| ||||| | || ||||| | |||||||| Sbjct 7991 AACAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACA 8050 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| ||||| ||| | || | || || ||||| Sbjct 8051 ACATCCAAAAGGAGGCAACCCTCCACTTGGTTTT 8084 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| || || |||||||| || || || ||| ||| | Sbjct 14268 AATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTC 14327 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| ||||| || ||| | || |||||| | ||||| || ||| | || || |||| Sbjct 14328 GGATACTGTAGACAATGTGAAGGCAAAAA-TCCAGGACAAGGAGGGTATCCCACCGGATC 14386 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||||| || ||||| || |||||| ||||||| | || ||||| | |||||||| Sbjct 14387 AGCAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACA 14446 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| ||||| ||||| || | || || ||||| Sbjct 14447 ACATCCAAAAGGAGTCAACCCTCCACTTGGTTTT 14480 Score = 123 bits (136), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || |||||||| || |||||||| || || || ||| ||| | Sbjct 14040 AATGCAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTC 14099 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| ||||| || ||| | || | |||||| ||||| || ||| | || || |||| Sbjct 14100 GGATACTGTAGACAATGTGAAGGC-AAAAATCCAGGACAAGGAGGGTATCCCACCGGATC 14158 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || || | || ||||| || |||||| ||||||| | |||||||| | ||| |||| Sbjct 14159 AGCAACGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTACA 14218 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| |||||||| || || | || || ||| Sbjct 14219 ACATCCAAAAAGAATCAACCCTCCACTTGGTT 14250 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| | || |||||||| || || | || || || || Sbjct 8100 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 8159 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| |||| | | ||||||| || || ||||| | |||| Sbjct 8160 TGATACCATTGATAATGTGAAAGCAAAGA-TCACTGACAAGGAGGGCATACCGACTGATC 8218 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || | || ||||| || |||||||| ||||| | || ||||| | |||||||| Sbjct 8219 AACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACA 8278 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| ||||| ||| | || | || || ||||| Sbjct 8279 ACATCCAAAAGGAGGCAACCCTTCACTTGGTTTT 8312 >seq1539 Length=61058 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| |||||||| || |||||||| || || || || || || || Sbjct 9118 AATGCAAATTTTCGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAGGTCGAGAGCAG 9177 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| |||| | | |||| || || || | || | |||| Sbjct 9178 TGATACCATTGATAATGTGAAAGCAAAGA-TCACTGATAAGGAGGGCATTCCAACTGATC 9236 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || || | || ||||| || |||||||| ||||| | |||||||| | |||||||| Sbjct 9237 AGCAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGATTACA 9296 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| ||||| ||| | || | || || ||||| Sbjct 9297 ACATCCAAAAGGAGGCAACCCTTCACTTGGTTTT 9330 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| | || |||||||| || || | || || || || Sbjct 9346 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 9405 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| |||| | | |||| || || || | || | |||| Sbjct 9406 TGATACCATTGATAATGTGAAAGCAAAGA-TCACTGATAAGGAGGGCATTCCAACTGATC 9464 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || || | || ||||| || |||||| ||||||| | |||||||| | |||||||| Sbjct 9465 AGCAACGCCTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTACA 9524 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| ||||| ||| | || | || || ||||| Sbjct 9525 ACATCCAAAAGGAGGCAACCCTTCACTTGGTTTT 9558 >seq3991 Length=17808 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| || || |||||||| || || || ||| ||| | Sbjct 12061 AATGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGTGAAAGTTC 12002 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||||| || ||| | || | |||| | ||||| || ||| | ||||| || | Sbjct 12001 TGATACTGTAGACAATGTGAAGGCGAAAA-TCCAGGACAAGGAGGGTATCCCGCCGGACC 11943 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || || | || ||||| || |||||| ||||||| | || ||||| | |||||||| Sbjct 11942 AGCAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTACA 11883 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| ||||| ||||| || | || || ||| Sbjct 11882 ACATCCAAAAGGAGTCAACCCTCCACTTGGTT 11851 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || |||||||| ||||||||||| || || | ||| || | Sbjct 12289 AATGCAGATTTTTGTGAAAACCCTAACGGGAAAAACCATAACCTTGGAATGCGAAAGTTC 12230 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || || || ||| | || | |||| | ||||| || ||| | || || || | Sbjct 12229 TGATACCGTAGACAATGTGAAGGCGAAAA-TCCAGGACAAGGAGGGTATCCCACCGGACC 12171 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || || || ||||| || |||||||| || || | || ||||| | |||||||| Sbjct 12170 AACAACGGTTGATTTTTGCAGGAAAACAACTCGAGGATGGTCGTACTTTGGCCGATTACA 12111 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||| ||||| ||||| || | ||||| || || Sbjct 12110 ACATCCAAAAGGAGTCAACCCTCCATTTGGTGTT 12077 >seq10184 Length=3342 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || || || || || |||||||| | || || || || | Sbjct 972 ATGCAAATCTTCGTGAAGACACTGACCGGGAAGACGATCACCATGGATGTGGAGTCGAAC 913 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| || || | | || || || ||||| ||||| | ||||| || || Sbjct 912 GACACGGTGGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAG 853 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||||||||||||||| |||| |||||| | | ||| |||||| Sbjct 852 CAGCGACTTATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGGCCGACTACAAC 793 Query 23791 ATACA 23795 || || Sbjct 792 ATTCA 788 >seq6138 Length=12267 Score = 82.4 bits (90), Expect = 5e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| || || || ||||| |||||||| || || || ||| Sbjct 8597 AATGCAGATTTTCGTCAAAACTCTGACAGGCAAAACCATCACTCTGGAGGTCGAGGCCAG 8538 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || || ||||||||||| | ||||| |||| Sbjct 8537 CGACACCATTGAGAATGTCAAGGC-CAAGATCCAGGACAAAGAAGGCATCCCGCCGGATC 8479 Query 23729 AACAGCG 23735 ||||||| Sbjct 8478 AACAGCG 8472 >seq2067 Length=34267 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || || || || || |||||||| | || || || || | Sbjct 29764 ATGCAAATCTTCGTGAAGACGCTGACCGGGAAGACGATCACCATGGATGTGGAGTCGAAC 29705 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || || || | | || || || ||||| || || | ||||| || || Sbjct 29704 GATACAGTGGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 29645 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||||||||||||||| |||| |||||| | | ||| |||||| Sbjct 29644 CAGCGACTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTGGCCGACTACAAC 29585 Query 23791 ATACA 23795 || || Sbjct 29584 ATTCA 29580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337595488066700