Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3991 138 3e-27 seq2970 131 4e-25 seq1539 111 4e-19 seq10184 107 5e-18 seq8832 102 2e-16 seq2067 93.3 1e-13 >seq3991 Length=17808 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | |||||| || || || ||||||| ||||||||||||||||||| ||||| Sbjct 11848 CAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATC 11907 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | || || || || || || || ||||| ||||| ||||| ||||| |||||||| Sbjct 11908 TTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTC 11967 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||||||| || | || || || |||| |||| || || || Sbjct 11968 CTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCTAGGGTTATAGT 12027 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||| |||||||| ||| | ||||||| Sbjct 12028 TTTTCCAGTCAGAGTTTTTACGAAAATTTGCATT 12061 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||| |||||||||| |||||| ||||||||||| | ||||||||||| || Sbjct 17282 TGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCTTCTAGTTGT 17341 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 ||||| || ||||| || |||||||| || | ||| || || ||||| || ||||||| Sbjct 17342 TTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTATCAGTGATCTTT 17401 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || ||||| || | | || || || || || || || || || ||| Sbjct 17402 GCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTC 17461 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 |||||||| | || | ||||||| Sbjct 17462 AAAGTTTTCACAAAAATTTGCATT 17485 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||| |||||||||| |||||| ||||||||||| | |||||||| | || Sbjct 17054 TGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCTTCCAATTGT 17113 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 ||||| || ||||| || ||||| || || | ||||| || ||||| || ||||||| Sbjct 17114 TTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTT 17173 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || ||||| || | | || || || || || || || || || ||| Sbjct 17174 GCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTC 17233 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 |||||||| | || | ||||||| Sbjct 17234 AAAGTTTTCACAAAAATTTGCATT 17257 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || || || ||||||| ||||||||||||||||| | ||||| || || || Sbjct 12086 TGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCCTCGAGTTGT 12145 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || | ||||||||||| || || ||||| |||||||| ||||| || Sbjct 12146 TTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATTTTC 12205 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || | ||| || || |||| || || || || || || ||||| Sbjct 12206 GCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTTTTTCCCGTT 12265 Query 225691 AAAGTTTTTATGAACACTTGCATTTTATGG 225720 | ||||| | || | |||||| |||| Sbjct 12266 AGGGTTTTCACAAAAATCTGCATTCCATGG 12295 >seq2970 Length=24236 Score = 131 bits (144), Expect = 4e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 |||||| || | || ||||||| ||||||||||||||||||| |||||||| || || Sbjct 8076 GTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTG 8017 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || ||||| || |||||||| || | |||||||||||||||||| |||||| Sbjct 8016 TTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCAGTGATCTT 7957 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | || | | || || ||||| | | || || || | || || || || || || Sbjct 7956 TGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTTTTCCCGGT 7897 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 ||||||||| | || | ||||||| Sbjct 7896 CAAAGTTTTCACAAAAATTTGCATT 7872 Score = 131 bits (144), Expect = 4e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || | || ||||||| ||||||||||||||||||| |||||||| || || Sbjct 8304 GTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTG 8245 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||||| || ||||| || |||||||| || | ||| || || |||||||| |||||| Sbjct 8244 TTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTT 8185 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | |||||| || ||||| || | | || || || || || || || || || || Sbjct 8184 TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGT 8125 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 ||||||||| | || | ||||||| Sbjct 8124 CAAAGTTTTCACAAAAATTTGCATT 8100 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 |||||||||| ||||||||||| ||||| | |||||||| || || ||||| || ||| Sbjct 7835 TCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAG 7776 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || || |||||||| || | ||| || || |||||||| ||||||| |||||| Sbjct 7775 ATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTCACATTA 7716 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 || ||||| || | | || || || || || || || || || ||||||||||| | Sbjct 7715 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 7656 Query 225703 AACACTTGCATT 225714 || | ||||||| Sbjct 7655 AAAATTTGCATT 7644 Score = 118 bits (130), Expect = 3e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 |||||| || || || ||||||| ||||||||||||||||| | |||||||| | || Sbjct 14472 GTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCTTCCAATTG 14413 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || ||||| | ||||| || || || || ||||| |||||||| ||||| || Sbjct 14412 TTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTT 14353 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | ||||||| || | || || || |||| || | || || || || || || Sbjct 14352 TGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTTTTTCCGGT 14293 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || |||||| | ||| | ||||||| Sbjct 14292 CAGAGTTTTCACGAAAATTTGCATT 14268 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | |||||| || ||||||||||||| ||||| ||||||||||| | ||||| Sbjct 14253 CAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATC 14194 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | || || || || || || || ||||| || || || || ||||| |||||||| Sbjct 14193 TTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTC 14134 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| ||||||| || | || || || |||| || | || || || Sbjct 14133 CTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGT 14074 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGG 225720 || || |||| ||||| | || | |||||| |||| Sbjct 14073 TTTTCCGGTCAGGGTTTTCACAAAAATCTGCATTCCATGG 14034 >seq1539 Length=61058 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||| |||||||||| |||||| ||||||||||| | |||||||| || || Sbjct 9777 TGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCTTCGAGTTGT 9718 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || ||||| || || | ||||| || ||||| || ||||||| Sbjct 9717 TTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTT 9658 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || ||||| || | | || || || | || || || || || ||| Sbjct 9657 GCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGAGTTATGGTTTTTCCGGTC 9598 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | ||||| | ||| | ||||||| Sbjct 9597 AGGGTTTTCACGAAAATTTGCATT 9574 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || | || ||||||| ||||||||||||||||| | |||||||| | || Sbjct 9550 GTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCCAATTG 9491 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || ||||| || ||||| || || | ||||| || ||||| || |||||| Sbjct 9490 TTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTT 9431 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | |||||| || ||||| || | | || || || || || || || || || || Sbjct 9430 TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGT 9371 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 ||||||||| | || | ||||||| Sbjct 9370 CAAAGTTTTCACAAAAATTTGCATT 9346 Score = 104 bits (114), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || | || ||||||| ||||||||||||||||| | |||||||| || || Sbjct 9322 GTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCGAGTTG 9263 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || || ||||| || ||||| || || | ||||| || ||||| || |||||| Sbjct 9262 TTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTT 9203 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | |||||| || ||||| || | | || || || | || || || || || || Sbjct 9202 TGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATGGTTTTTCCGGT 9143 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || ||||| | ||| | ||||||| Sbjct 9142 CAGGGTTTTCACGAAAATTTGCATT 9118 >seq10184 Length=3342 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| ||||||| || | || || || || || || || |||||||||||||| || Sbjct 794 TTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGTCGCTGC 853 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| ||||| || ||||||||||| |||||||| |||||| || | ||||| Sbjct 854 TGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACCGTGTCG 913 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || | ||||||||||| || |||| || || | ||| | |||||| Sbjct 914 TTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATTTGCAT 972 >seq8832 Length=4481 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| ||||||| || | ||||| || || || || || |||||||| |||||||| Sbjct 608 TTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGTCGTTGC 667 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| ||||| || || ||||| || |||||||| |||||| || | ||||| Sbjct 668 TGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACCGTGTCG 727 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||| ||| | ||||||||||| || |||| || || | ||| | |||||| Sbjct 728 TTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATTTGCAT 786 >seq2067 Length=34267 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| ||||||| || | || || || || || || || |||||||| ||||| || Sbjct 29586 TTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGTCGCTGC 29645 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| ||||| || || |||||||| |||||||| |||||| || | || || Sbjct 29646 TGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACTGTATCG 29705 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || | ||||||||||| || |||| || || | ||| | |||||| Sbjct 29706 TTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATTTGCAT 29764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190995247764350