Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq3991 98.7 8e-16 seq2970 98.7 8e-16 seq1539 87.8 1e-12 >seq3991 Length=17808 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | ||||| || ||||| || ||||||||||||| |||| | ||||||| Sbjct 11852 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCC 11911 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 |||||||| || ||| | || || | ||| ||||| || | || || ||||| Sbjct 11912 AATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGG 11971 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTT 101207 ||||| ||||||| | | || || || | || || ||| | ||| ||||||| Sbjct 11972 ATTTTCGCCTTCACATTGTCTACAGTATC--AGAACTTTCACATTCTAGGGTTATAGTTT 12029 Query 101208 TGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 | || |||| ||||| | |||||||||||| Sbjct 12030 TTCCAGTCAGAGTTTTTACGAAAATTTGCATT 12061 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101048 TCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATAT 101107 |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||| | Sbjct 17066 TCTTTTTGGATATTGTAGTCGGCCAAAGTACGGCCATCTTCCAATTGTTTCCCCGCAAAG 17125 Query 101108 ATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCG 101167 || || | ||| || || || | ||| || || || | || ||| |||||||| Sbjct 17126 ATCAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTA 17185 Query 101168 GCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATA 101227 | | || || || | || | ||| || ||||| || ||||| ||||| | | Sbjct 17186 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 17245 Query 101228 AAAATTTGCATT 101239 |||||||||||| Sbjct 17246 AAAATTTGCATT 17257 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101048 TCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATAT 101107 |||||||| |||||||| ||||||| ||| | |||||| | |||||| |||||| | Sbjct 17294 TCTTTTTGGATATTGTAGTCGGCCAAAGTGCGGCCATCTTCTAGTTGTTTCCCCGCAAAG 17353 Query 101108 ATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCG 101167 || || | |||||| || || | ||| || || || | || ||| |||||||| Sbjct 17354 ATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTA 17413 Query 101168 GCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATA 101227 | | || || || | || | ||| || ||||| || ||||| ||||| | | Sbjct 17414 TCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACA 17473 Query 101228 AAAATTTGCATT 101239 |||||||||||| Sbjct 17474 AAAATTTGCATT 17485 >seq2970 Length=24236 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | |||||||||||||| || ||||| ||||||| ||| | ||||||| Sbjct 14249 ACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCTTCC 14190 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 |||||||| || ||| | || |||| ||| || || || | || || ||||| Sbjct 14189 AATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGG 14130 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTT 101207 |||||| ||||||| | | || || || | || || ||| | ||| || |||| Sbjct 14129 ATTTTTGCCTTCACATTGTCTACAGTATC--CGAACTTTCACATTCCAGGGTTATGGTTT 14072 Query 101208 TGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 | || |||| ||||| | |||||| |||||| Sbjct 14071 TTCCGGTCAGGGTTTTCACAAAAATCTGCATT 14040 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 || |||| ||| | |||| || ||||| || ||||||||||||| |||| | |||| Sbjct 8312 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCT 8253 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 || | |||||| |||||| | || || | |||||| || || | ||| || ||||| Sbjct 8252 TCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCA 8193 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTT 101206 | || ||| |||||||| | | || || || | || | ||| || ||| Sbjct 8192 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTT 8133 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| ||||| | ||||||||||||| Sbjct 8132 TTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 8100 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 |||| |||||||| || ||||||||||| | ||| | |||||| | |||||| ||| Sbjct 7841 GTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGTGCGGCCATCTTCGAGTTGTTTCCCC 7782 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || || | |||||| || || | ||| || ||||| | || ||| |||| Sbjct 7781 GCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGTGATCTTTGCTTTC 7722 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTT 101221 |||| | | || || || | || | ||| || ||||| || ||||| ||| Sbjct 7721 ACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTT 7662 Query 101222 TTAATAAAAATTTGCATT 101239 || | ||||||||||||| Sbjct 7661 TTCACAAAAATTTGCATT 7644 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 || |||| ||| | |||| || ||||| || ||||||||||||| |||| | |||| Sbjct 8084 AAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCT 8025 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 || | |||||| |||||| | || || | |||||| || || | ||||| ||||| Sbjct 8024 TCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCA 7965 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTT 101206 | || ||| ||| | || | | || || || | || | ||| || ||| Sbjct 7964 GTGATCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTT 7905 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| ||||| | ||||||||||||| Sbjct 7904 TTCCCGGTCAAAGTTTTCACAAAAATTTGCATT 7872 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 || |||| ||| | ||||| || ||||| || ||||||||||||| ||| | |||| Sbjct 14480 AAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCT 14421 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 ||||||||||| || ||| | || | | ||| || || || | || || ||||| Sbjct 14420 TCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCC 14361 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAG 101204 |||||| ||||||| | | || || || | || || ||| | ||| || | Sbjct 14360 TGGATTTTTGCCTTCACATTGTCTACAGTATC--CGAACTTTCACATTCCAGGGTTATGG 14303 Query 101205 TTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 |||| || |||| ||||| | |||||||||||| Sbjct 14302 TTTTTCCGGTCAGAGTTTTCACGAAAATTTGCATT 14268 >seq1539 Length=61058 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 || |||| ||| | |||| || ||||| || ||||||||||||| ||| | |||| Sbjct 9558 AAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCT 9499 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 ||||||||||| || ||| | || || | ||| || || || | ||| || || || Sbjct 9498 TCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCA 9439 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTT 101206 | || ||| |||||||| | | || || || | || | ||| || ||| Sbjct 9438 GTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTT 9379 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| ||||| | ||||||||||||| Sbjct 9378 TTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 9346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409158904710975