Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8845 111 2e-19 seq51152 102 1e-16 seq2102 84.2 3e-11 >seq8845 Length=2813 Score = 111 bits (122), Expect = 2e-19 Identities = 122/162 (75%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 46683 TGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGA 46742 |||||| ||||||||||| || || || || ||||| || || || || ||| || || Sbjct 2022 TGTGAGACCAGGCATTAGACCGCGTTTCTTCAGCCAGAAAATTGCTGCAAAACTGCCCGA 1963 Query 46743 AAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT 46802 ||||| || ||||| || |||||||||||||| | ||| |||||| | | || |||| Sbjct 1962 GAAGAAAATTCCTTCGACCGCCGCGAATGCGACCAATCTTTCTCCGAATGTAGCCTCATG 1903 Query 46803 AT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTAC 46841 || |||||| | | |||||||| ||||||||||| || Sbjct 1902 ATTGGAAATCCAACGTAATGCCCAATCTGCCTTTTTCTTGAC 1861 >seq51152 Length=820 Score = 102 bits (112), Expect = 1e-16 Identities = 120/162 (74%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 46683 TGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGA 46742 |||||| || |||||||| || || || || | ||| || || || || ||| || || Sbjct 60 TGTGAGACCCGGCATTAGACCGCGTTTCTTCAACCAGAAAATTGCTGCAAAACTGCCCGA 119 Query 46743 AAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT 46802 ||||| || ||||| || |||||||||||||| | ||| |||||| | | || |||| Sbjct 120 GAAGAAAATTCCTTCGACCGCCGCGAATGCGACCAATCTTTCTCCGAATGTAGCCTCATG 179 Query 46803 AT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTAC 46841 || |||||| | | |||||||| ||||||||||| || Sbjct 180 ATTGGAAATCCAACGTAATGCCCAATCTGCCTTTTTCTTGAC 221 >seq2102 Length=28109 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 44438 TATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATTTATTTTAAAGGTATCTTT 44497 |||||||| |||| | ||||||||| | || ||| | ||||| ||||| |||| Sbjct 12185 TATACGTTCGCAGATCAATTGAGCTATACGGTCGCCTATTTTTATCTTAAATTCCTCTTC 12244 Query 44498 TCCATTATTGATCAAAATTACTCCAATGTTCCCC-CTATAATCTTCATCTATTACTCCAC 44556 || | |||| || | |||| | |||| || | |||||||||||| || |||||| Sbjct 12245 GCCGTGGTTGAATAACAATACTTTGA-GTTCGCCACGATAATCTTCATCAATCACTCCAG 12303 Query 44557 CTCCCACATCAAT---ACCTTTTAGAGAAAGACCCGATCTAGGCGCTATTCTTCCATAA 44612 | || ||||| || | ||||| | ||| || |||||||| ||||| | ||||||| Sbjct 12304 CACCTACATCTATGAAATATTTTACTGCAAGTCCTGATCTAGGTGCTATGCGTCCATAA 12362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712038553368000