Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3991 132 1e-25 seq2970 122 2e-22 seq1539 100 7e-16 seq10184 91.5 3e-13 >seq3991 Length=17808 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || | || || || ||||| |||||||||||||||||||| ||||| Sbjct 11839 CCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGT 11898 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 || |||||||| | ||| || || || || || | |||||||||| || ||| || Sbjct 11899 TCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATACC 11958 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || ||||| || ||| | ||||| | || ||||| || ||| || Sbjct 11959 CTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACTTTCACATTCTAG 12018 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || |||||||| || || ||||| || ||||| | |||||| Sbjct 12019 GGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCATT 12061 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | | || | ||| || || ||||| |||||||||||||||||||| ||||| Sbjct 12067 CCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGT 12126 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || ||| || || || || | || || ||||||| | ||| || Sbjct 12127 ACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACC 12186 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || ||||| || ||| | |||||| | || ||||| || ||| | Sbjct 12187 CTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAA 12246 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| ||||| || || ||||| || | ||||||| Sbjct 12247 GGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCATT 12289 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | | || | |||||| || | |||||||||||| ||||| ||||| ||||| Sbjct 17263 CCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGT 17322 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||||| |||||| || ||||| || | || || || | || || || Sbjct 17323 GCGGCCATCTTCTAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCC 17382 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || ||| ||| ||| | || | | | || ||||| || || | Sbjct 17383 CTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAA 17442 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || | ||| ||||| || | |||||| Sbjct 17443 GGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17485 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | | || | |||||| || | |||||||||||| ||||| ||||| ||||| Sbjct 17035 CCTGAGGCGCAAAACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGT 17094 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | |||||| || ||||| || | ||||| || | | || || Sbjct 17095 ACGGCCATCTTCCAATTGTTTCCCCGCAAAGATCAGGCGTTGCTGATCAGTTGGAATGCC 17154 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || ||| ||| ||| | || | | | || ||||| || || | Sbjct 17155 CTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAA 17214 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || | ||| ||||| || | |||||| Sbjct 17215 GGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 17257 >seq2970 Length=24236 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| |||||||||||||||||||| ||||| | |||||||| | Sbjct 14475 CAAG-TGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGGCCATCTTCCA 14417 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| | | ||||| |||| | ||| || ||||| || || | Sbjct 14416 ATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGA 14357 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| || ||| | ||||| | || ||||| || ||| || || || ||||| | Sbjct 14356 TTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAGGGTTATGGTTTTTC 14297 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||| |||||||| | |||||| Sbjct 14296 CGGTCAGAGTTTTCACGAAAATTTGCATT 14268 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || | || || || || ||||||||||||||||| ||||| ||||| Sbjct 14262 CCTGAGGCGCAGAACCAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCGGCCAAAGT 14203 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || || || || |||| ||||| |||| | ||| || Sbjct 14202 GCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGCCGTTGCTGATCCGGTGGGATACC 14143 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || |||||| || ||| | ||||| | || ||||| || ||| || Sbjct 14142 CTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATCCGAACTTTCACATTCCAG 14083 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || || || ||||| || | ||||||| Sbjct 14082 GGTTATGGTTTTTCCGGTCAGGGTTTTCACAAAAATCTGCATT 14040 Score = 105 bits (116), Expect = 2e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | | || | |||||| || | |||||||||||||||||||||||||||||| Sbjct 7866 CCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTAATCGGCTAAAGT 7807 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || |||||| || ||||| || | || || || | || || || Sbjct 7806 GCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCC 7747 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || ||| ||| ||| | || | | | || ||||| || || | Sbjct 7746 CTCCTTGTCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAA 7687 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || | ||| ||||| || | |||||| Sbjct 7686 GGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCATT 7644 Score = 104 bits (114), Expect = 5e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || | ||| |||||||||||||||||||| ||||||| |||||||| | Sbjct 8079 CAAG-TGGAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGA 8021 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| || | || || || | || || |||||||| || | Sbjct 8020 GTTGTTTTCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCAGTGA 7961 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||| | | | || | |||| | |||||| || || || || || ||||| | Sbjct 7960 TCTTTGCTTTAATATTATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTTTTCC 7901 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || | ||| ||||| || | |||||| Sbjct 7900 CGGTCAAAGTTTTCACAAAAATTTGCATT 7872 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || | ||| |||||||||||||||||||| ||||||| |||||||| | Sbjct 8307 CAAG-TGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGA 8249 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | |||||| || ||||| || | || || || | || || || ||||| || | Sbjct 8248 GTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATCAGTCGGTATGCCCTCCTTGTCAGTGA 8189 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||| ||| | || | | | || ||||| || || | || || ||||| | Sbjct 8188 TCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTC 8129 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || | ||| ||||| || | |||||| Sbjct 8128 CGGTCAAAGTTTTCACAAAAATTTGCATT 8100 >seq1539 Length=61058 Score = 100 bits (110), Expect = 7e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | | || | |||||| || | |||||||||||| ||||| ||||| ||||| Sbjct 9796 CCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGCCAAAGT 9737 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| || | ||||| || | | || || Sbjct 9736 GCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCC 9677 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || ||| ||| ||| | || | | | || ||||| || || || Sbjct 9676 CTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAG 9617 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || ||||| || || || || |||||||| | |||||| Sbjct 9616 AGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9574 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || | ||| |||||||||||||||||||| ||||| | |||||||| | Sbjct 9325 CAAG-TGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCGA 9267 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| || | ||||| || | | || || ||||| || | Sbjct 9266 GTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGA 9207 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||| ||| | || | | | || ||||| || || || || || ||||| | Sbjct 9206 TCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAGGGTTATGGTTTTTC 9147 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || |||||||| | |||||| Sbjct 9146 CGGTCAGGGTTTTCACGAAAATTTGCATT 9118 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || | ||| |||||||||||||||||||| ||||| | |||||||| | Sbjct 9553 CAAG-TGAAGGGTTGCCTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCTTCCA 9495 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| || | ||||| || | | || || ||||| || | Sbjct 9494 ATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATCAGTTGGAATGCCCTCCTTATCAGTGA 9435 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||| ||| | || | | | || ||||| || || | || || ||||| | Sbjct 9434 TCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGACCTCCAAGGTTATGGTTTTTC 9375 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || | ||| ||||| || | |||||| Sbjct 9374 CGGTCAAAGTTTTCACAAAAATTTGCATT 9346 >seq10184 Length=3342 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 151920 TGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGC 151979 || |||||||| ||||| | || | || || || || ||| |||||||||||||| Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 151980 CTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACG 152039 | ||||||||||| || ||| |||||||| || || || || || || |||| || Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 152040 CTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACC 152099 |||| ||| || || | || || || || || || || ||||||||||||| Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 152100 TGCAT 152104 ||||| Sbjct 968 TGCAT 972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152334705852275