Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1539 123 2e-23 seq2970 118 8e-22 seq10184 114 9e-21 seq2067 105 5e-18 seq3991 98.7 7e-16 seq8832 96.9 2e-15 seq9051 82.4 5e-11 >seq1539 Length=61058 Score = 123 bits (136), Expect = 2e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | ||| |||| |||||| || |||||||||||||||||| Sbjct 9352 TTGCATTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTA 9293 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| | ||| | || || || || || || |||||||| | || |||||||| Sbjct 9292 ATCGGCCAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATC 9233 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGG 44282 | || | || ||||| || || ||||| ||| |||| | | ||||| || | Sbjct 9232 AGTTGGAATGCCCTCCTTATCAGTGATCTT-TGCTTTCACATTATCAATGGTATCACTGC 9174 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| || || || ||||| || ||||| |||||||| |||||||| Sbjct 9173 TCTCGACCTCCAGGGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCAT 9119 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | ||| |||| |||||| || |||||||||||||||||| Sbjct 9580 TTGCATTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTA 9521 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| | ||| | || |||| || || || |||||||| | || |||||||| Sbjct 9520 ATCGGCCAAAGTGCGGCCATCTTCCAATTGTTTTCCTGCAAAGATGAGGCGTTGCTGATC 9461 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGG 44282 | || | || ||||| || || ||||| ||| |||| | | ||||| || | Sbjct 9460 AGTTGGAATGCCCTCCTTATCAGTGATCTT-TGCTTTCACATTATCAATGGTATCACTGC 9402 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| || || || ||||| || | || ||||| || |||||||| Sbjct 9401 TCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 9347 >seq2970 Length=24236 Score = 118 bits (130), Expect = 8e-22 Identities = 171/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | ||| |||| ||| || || |||||||||||||||||| Sbjct 8106 TTGCATTCCTCCCCTGAGGCGCAAAACCAAGTGGAGGGTTGCCTCCTTTTGGATGTTGTA 8047 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||||| |||| || | || || || || || || |||||||||| || || ||| Sbjct 8046 ATCGGCCAAAGTT--CGGCCATCTTCGAGTTGTTTTCCCGCAAAGATCAGGCGTTGTTGA 7989 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGC 44280 || | || | ||||||||| || || ||||| ||||| ||| || | || ||||| | Sbjct 7988 TCAGTCGGAATACCTTCCTTGTCAGTGATCTT-TGCTTTAATATTATCAATTGTGTCAGT 7930 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| || || || || || || | || ||||| || |||||||| Sbjct 7929 ACTCTCGACCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCACAAAAATTTGCAT 7873 Score = 113 bits (124), Expect = 3e-20 Identities = 170/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | ||| |||| |||||| || |||||||||||||||||| Sbjct 8334 TTGCATTCCTCCCCTGAGGCGCAAAACCAAGTGAAGGGTTGCCTCCTTTTGGATGTTGTA 8275 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||||| |||| || | || || || || ||||| |||||||||| || || ||| Sbjct 8274 ATCGGCCAAAGTT--CGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGA 8217 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGC 44280 || | || | || ||||| || || ||||| ||| |||| | | ||||| || Sbjct 8216 TCAGTCGGTATGCCCTCCTTGTCAGTGATCTT-TGCTTTCACATTATCAATGGTATCACT 8158 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||| || || || ||||| || | || ||||| || |||||||| Sbjct 8157 GCTCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 8101 Score = 105 bits (116), Expect = 5e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | ||| |||| ||||| || ||| |||||||||||||| Sbjct 7878 TTGCATTCCTCCCCTGAGGCGCAAAACCAAATGAAGGGTTGCCTCTTTTTGGATGTTGTA 7819 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| | ||| | || || || || ||||| |||||||||| || || ||||| Sbjct 7818 ATCGGCTAAAGTGCGGCCATCTTCGAGTTGTTTCCCCGCAAAGATCAGGCGTTGTTGATC 7759 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGG 44282 | || | || ||||| || || ||||| ||| |||| | | ||||| || | Sbjct 7758 AGTCGGTATGCCCTCCTTGTCAGTGATCTT-TGCTTTCACATTATCAATGGTATCACTGC 7700 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| || || || ||||| || | || ||||| || |||||||| Sbjct 7699 TCTCGACCTCCAAGGTTATGGTTTTTCCGGTCAAAGTTTTCACAAAAATTTGCAT 7645 Score = 105 bits (116), Expect = 5e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| || | ||| |||| ||| || || |||||||||||||||||||||||| Sbjct 14495 CCTCCTCTAAGGCGCAAAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCC 14436 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | || | || |||| || || || |||||||||||||| |||||||| | || Sbjct 14435 AAAGTACGGCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGTTGCTGATCCGGTGGG 14376 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA-TTCCAC 44289 | ||| ||||| ||| || || ||||| | ||| || || || | || ||| Sbjct 14375 ATACCCTCCTTGTCCTGGATTTTTGCCTTCACATTGTCTACAGTATC--CGAACTTTCAC 14318 Query 44290 -CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || || ||||| || || || |||||||| |||||||| Sbjct 14317 ATTCCAGGGTTATGGTTTTTCCGGTCAGAGTTTTCACGAAAATTTGCAT 14269 >seq10184 Length=3342 Score = 114 bits (126), Expect = 9e-21 Identities = 139/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 44153 TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAA 44212 || |||||||| ||||| || ||| |||| ||||| || || ||||| ||||| | Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTAT 44271 |||||||| || | || | |||||||| ||| ||||| ||||| |||| | | Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCCAC 906 Query 44272 GGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 |||||| || ||||| |||| || |||||||| || || || |||||||||||||| Sbjct 907 CGTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGAT 966 Query 44332 TTGCATG 44338 ||||||| Sbjct 967 TTGCATG 973 >seq2067 Length=34267 Score = 105 bits (116), Expect = 5e-18 Identities = 137/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 44153 TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAA 44212 || |||||||| ||||| || ||| |||| ||||| || || ||||| ||||| | Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTAT 44271 |||||||| || | || | || ||||| ||| ||||| ||||| |||| | | Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCCAC 29698 Query 44272 GGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 || ||| || ||||| |||| || |||||||| || || || |||||||||||||| Sbjct 29699 TGTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGAT 29758 Query 44332 TTGCATG 44338 ||||||| Sbjct 29759 TTGCATG 29765 >seq3991 Length=17808 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | |||||||| || || || |||||||||||||||||| Sbjct 12055 TTGCATTCCTCCCCTGAGGCGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTA 12114 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| | || | || || || || || || ||||| ||||| || || || || Sbjct 12115 ATCGGCCAAAGTACGACCATCCTCGAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTC 12174 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | ||| ||||| ||| || ||| ||||| | ||| ||| || | Sbjct 12175 CGGTGGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACGGTATCAGAACT 12234 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| || || || |||||||| ||||| ||||| || || ||||| Sbjct 12235 TTCGCATTCCAAGGTTATGGTTTTTCCCGTTAGGGTTTTCACAAAAATCTGCAT 12288 >seq8832 Length=4481 Score = 96.9 bits (106), Expect = 2e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 44153 TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAA 44212 || |||||||| ||||| || ||| | || ||||| || || ||||| ||||| | Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTAT 44271 || ||||| || | || | || ||||| ||| ||||| ||||| |||| | | Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCAC-GTTCTCCAC 720 Query 44272 GGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 |||||| || |||| |||| || |||||||| || || || |||||||||||||| Sbjct 721 CGTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGAT 780 Query 44332 TTGCATG 44338 ||||||| Sbjct 781 TTGCATG 787 >seq9051 Length=5414 Score = 82.4 bits (90), Expect = 5e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | || ||| || || || ||| ||||||||||||||||||||| Sbjct 4161 CATTCCTCCGCGCAGACGCAGCACGAGATGCAGAGTGGACTCCTTTTGGATGTTGTAATC 4220 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 ||||| || |||| || || ||||| |||||||||||| Sbjct 4221 CGCGAGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATC 4263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359549358323925