Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2067 143 2e-29 seq10184 140 3e-28 seq8832 131 2e-25 seq6138 89.7 5e-13 seq27157 84.2 2e-11 seq2297 84.2 2e-11 seq9051 82.4 7e-11 >seq2067 Length=34267 Score = 143 bits (158), Expect = 2e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 41677 CTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAG 41736 ||||||||| ||||||| |||||||| |||| || || || ||||||||||| || || Sbjct 29579 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAG 29638 Query 41737 GCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC 41796 ||||| ||||||| || | || |||||||||| ||| || ||||| | ||| Sbjct 29639 TCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCAC 29698 Query 41797 AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAAT 41856 || ||| |||||||||| |||| || ||||| || || ||||||||||| ||||| || Sbjct 29699 TGTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGAT 29758 Query 41857 CTGCATG 41863 |||||| Sbjct 29759 TTGCATG 29765 >seq10184 Length=3342 Score = 140 bits (154), Expect = 3e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 41677 CTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAG 41736 ||||||||| ||||||| |||||||| |||| || || || ||||||||||| || || Sbjct 787 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAG 846 Query 41737 GCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC 41796 ||||| ||||||| || | || ||||||||| ||| || ||||| | ||| Sbjct 847 TCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCAC 906 Query 41797 AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAAT 41856 |||||| |||||||||| |||| || ||||| || || ||||| ||||| ||||| || Sbjct 907 CGTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGAT 966 Query 41857 CTGCATG 41863 |||||| Sbjct 967 TTGCATG 973 >seq8832 Length=4481 Score = 131 bits (144), Expect = 2e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 41677 CTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAG 41736 ||||||||| ||||||| |||||||| | || || || || ||||||||||| || || Sbjct 601 CTGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAG 660 Query 41737 GCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC 41796 || || ||||||| || | || |||||| ||| ||| || ||||| | ||| Sbjct 661 TCGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCAC 720 Query 41797 AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAAT 41856 |||||| ||||||||| |||| || ||||| || || ||||||||||| ||||| || Sbjct 721 CGTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGAT 780 Query 41857 CTGCATG 41863 |||||| Sbjct 781 TTGCATG 787 >seq6138 Length=12267 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| || |||| || || ||| ||||||||| || || ||||| | Sbjct 8598 CCGCCGCGAAGACGCAAGACCAAGTGAAGTGTGGACTCCTTCTGGATATTGTAGTCAGCA 8657 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 |||||||| |||| |||||||||||||| ||||| ||| Sbjct 8658 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 8696 >seq27157 Length=1261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| ||| ||||| ||||||||| || || || || | Sbjct 1035 CCACCACGAAGACGCAACACCAAATGAAGCGTCGACTCCTTCTGGATATTGTAATCAGCA 976 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 |||||||| |||| ||||||||||| |||||||| ||| Sbjct 975 AGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATC 937 >seq2297 Length=32998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| ||| ||||| ||||||||| || || || || | Sbjct 3193 CCACCACGAAGACGCAACACCAAATGAAGCGTCGACTCCTTCTGGATATTGTAATCAGCA 3134 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 |||||||| |||| ||||||||||| |||||||| ||| Sbjct 3133 AGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATC 3095 >seq9051 Length=5414 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||| || ||||| ||| ||||||||| ||||| || |||| Sbjct 3631 GCCTCCACGAAGACGCAACACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 3690 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 || ||||| | || || ||||||||||| ||||| ||| Sbjct 3691 AAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 3730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461723086130000