Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Soboliphyme_20baturini_20[genbank_20GCA_5F000951395.1_202014-10-12] 22,336 sequences; 218,332,512 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5314 170 2e-37 seq4487 84.2 2e-11 seq259 82.4 7e-11 >seq5314 Length=14302 Score = 170 bits (188), Expect = 2e-37 Identities = 259/367 (71%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| |||| |||||||||||||| || | | ||| ||| ||| ||||||||| ||||| Sbjct 5339 GGTGGAAAATTTTTCACAAGAAGTTCAGGCGCTGGAAGCGCGATACTTTTACGGCTTTCA 5398 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | || | ||||| | ||||| || ||||||||| |||| |||||| | ||| | || Sbjct 5399 GATTGCACTGGAAAATATACATTCTGAGATGTATTCGTTACTTATCGATGCTTACATCAA 5458 Query 57857 GGACAACGACGAGAAACGTAGA--CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCC 57914 || || | || | || ||||||||||| ||||||| |||| | Sbjct 5459 AAACCCCGCTCA--AAGGGAGTTGCTGTTCAACGCCGTCGAAACGCTGCCGTGTGTGAAG 5516 Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 ||||| ||||| ||| | | | |||||| | | || | | || || || | Sbjct 5517 AAGAAAGCAGACTGGGCGTTGAGATGGATCCACGGGAAATCGACACCTTTTGCTGAACGC 5576 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || | || ||| | |||||||||||||| || || |||||||| ||||| |||||| Sbjct 5577 CTTGTTGCCTTCTCTGCCGTCGAAGGTATTTTTTTCAGCGGCAGCTTCGCGGCTATATTT 5636 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| |||||||||| || || ||||| || | ||||| |||||||| | ||||| ||| Sbjct 5637 TGGTTGAAGAAACGTGGTCTTATGCCGGGTTTAACGTTCAGCAACGAACTCATATCACGC 5696 Query 58095 GACGAGG 58101 ||||||| Sbjct 5697 GACGAGG 5703 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaa 58394 ||||| || ||||||||| | | || || || |||| ||||| ||||| ||||||||| Sbjct 7705 AATCCATTCGATTTTATGGAACACATATCTCTGCAGGGAAAGACGAACTTCTTCGAAAAA 7764 Query 58395 aaaGTTAGCGAATATCAAAAATACGGCGTGATGA 58428 | ||| ||||||||||||||| |||||| |||| Sbjct 7765 AGGGTTGGCGAATATCAAAAATGCGGCGTAATGA 7798 >seq4487 Length=16325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 22603 AATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACAT 22662 ||||||| || ||| ||||||||||| ||||||| || ||||||| |||||| Sbjct 2944 AATTTTAGCTTTCAGCGCAGACCAGTCCCAAAGATCGGTAGGAATCACATT---CCACAT 2888 Query 22663 ATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATA 22722 ||||| ||||| | || || | || | |||| |||||||||||||| ||| | Sbjct 2887 GTCGTACTGCAAGATTCCCTTGCTGACAGGACACCCTTGATACGTTTCGTACGGTCCAAA 2828 Query 22723 TATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGAT 22779 | |||| | ||| ||||| || ||||| || ||| ||| || || || || || Sbjct 2827 CTTTTCGGCCAATTCACAGCTGGCTTCCAAAGCAGCGTGATAGATCGTTTCAAAAAT 2771 >seq259 Length=51451 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||||||||| || ||||||||||||||||| | || || || || || Sbjct 12104 CATGCAAATTTTCGTAAAGACCCTCACAGGCAAAACGATCACTTTAGAAGTCGAGCCTTC 12163 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | |||| || ||| || || || ||| || ||||| | || || || | Sbjct 12164 AGATACCATTGAAAATGTTAAAGCAAAG-ATTCAGGATAAAGAAGGAATTCCACCTGATC 12222 Query 31311 AGCAGCGTCTAATATTCGCTGG 31332 |||| || || || || ||||| Sbjct 12223 AGCAACGACTTATTTTTGCTGG 12244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445641942021120