Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Soboliphyme_20baturini_20[genbank_20GCA_5F000951395.1_202014-10-12] 22,336 sequences; 218,332,512 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2467 113 7e-20 seq259 98.7 1e-15 >seq2467 Length=23714 Score = 113 bits (124), Expect = 7e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || ||||||||||||||||||||||| || ||||| ||| || Sbjct 10129 ATGCAGATATTCGTCAAGACATTGACTGGAAAAACTATTACTTTGGAAGTTGAACCATCG 10070 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| || || || || |||||||| |||||||| || || Sbjct 10069 GACACGATTGAAAATGTTAAAGCGAAGATTCAGGACAAAGAAGGGATACCTCCGGATCAG 10010 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| ||||||||| |||||||| Sbjct 10009 CAACGATTGATTTTTGCCGGTA 9988 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | || || ||||| || ||||| ||||| |||||||| ||| | Sbjct 10984 AAAATGCAGATCTTCGTAAAGACGTTGACGGGTAAAACAATTACGTTAGAAGTGGAACCT 10925 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | || |||||| || ||||| ||||| ||||||||||| ||||| || Sbjct 10924 TCTGACACGATCGAAAACGTAAAGGCGAAAATTCAAGACAAAGAAGGCATCCCTCCCGAT 10865 Query 155940 CAACAAAGATTGATTTATGCCGGTA 155964 ||||| | ||||||| ||| |||| Sbjct 10864 CAACAGCGCTTGATTTTTGCAGGTA 10840 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| || || ||||||||||| || | || ||||| || Sbjct 9847 ATGCAAATTTTTGTCAAAACTTTAACGGGAAAAACTATCACGCTGGAGGTCGAGCCGTCA 9788 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| |||||||||||| || || ||||| || || || || Sbjct 9787 GACACAATTGAAAATGTTAAAGCTAAAATACAAGACAAGGAGGGCATTCCCCCTGATCAG 9728 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||||||||||||| ||| ||||| Sbjct 9727 CAAAGATTGATTTTTGCTGGTAA 9705 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| || || || ||||||||||| || ||||| ||| || Sbjct 10408 AATGCAGATTTTTGTCAAAACGTTAACGGGCAAAACTATTACGTTGGAAGTTGAACCGTC 10349 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| || || |||||| || |||||||| || || ||||| || || Sbjct 10348 GGACACGATTGAAAATGTTAAGGCTAAAATTCAGGATAAAGAGGGGATTCCTCCGGATCA 10289 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 || ||||||||| || |||| Sbjct 10288 GCAGCGATTGATTTTCGCAGGTA 10266 >seq259 Length=51451 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||||||||| || ||||| ||||| ||| |||| Sbjct 9628 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACATTGGAAGTAGAACCTTCT 9687 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||||| ||||| ||||| ||||| || || || || || || Sbjct 9688 GATACAATTGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGTATTCCGCCGGATCAG 9747 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | ||||| | ||| |||| Sbjct 9748 CAGCGCTTGATATTTGCAGGTA 9769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731667661337600