Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Soboliphyme_20baturini_20[genbank_20GCA_5F000951395.1_202014-10-12] 22,336 sequences; 218,332,512 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq259 149 1e-30 seq2467 131 3e-25 seq1945 86.0 1e-11 >seq259 Length=51451 Score = 149 bits (164), Expect = 1e-30 Identities = 117/140 (84%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||||||||||| ||| ||||||||||| ||||| || || |||||||| || ||| Sbjct 11959 CCAGCAAAGATTAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 11900 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||||||||| || ||||| ||||||||||| ||||| ||||| | Sbjct 11899 TTGACATTTTCAATCGTATCTGATGGCTCTACCTCCAAAGTTATAGTCTTTCCTGTAAGG 11840 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || ||||| |||||||| Sbjct 11839 GTTTTGACAAAAATCTGCAT 11820 Score = 140 bits (154), Expect = 6e-28 Identities = 115/140 (82%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || |||| ||| ||||| || || |||||||| ||||| |||||||||||| Sbjct 12244 CCAGCAAAAATAAGTCGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGAATCTTTGCT 12185 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| ||||| ||| || ||||| ||||| ||||| |||||||| | Sbjct 12184 TTAACATTTTCAATGGTATCTGAAGGCTCGACTTCTAAAGTGATCGTTTTGCCTGTGAGG 12125 Query 82791 GTCTTTACAAATATCTGCAT 82810 |||||||| || || ||||| Sbjct 12124 GTCTTTACGAAAATTTGCAT 12105 Score = 134 bits (148), Expect = 3e-26 Identities = 122/153 (80%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 82662 AGTTGTT---TTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 ||||||| | || ||||| || ||||| |||||||| ||||| || ||||| ||||| Sbjct 12827 AGTTGTTCCTTACCTGCAAAAATAAGTCTCTGTTGATCCGGAGGAATCCCTTCTTTATCC 12768 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| || || |||||||||||||| || | ||| |||||||| || || ||| Sbjct 12767 TGAATCTTCGCCTTAACATTTTCAATCGTGTCCGATGCTTCAACTTCCAAGGTAATTGTC 12708 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| | |||||| ||||| || |||||| Sbjct 12707 TTGCCTGTAAGCGTCTTGACAAAAATTTGCATT 12675 Score = 132 bits (146), Expect = 9e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||||| ||| || ||||| || || |||||||| ||||| ||||| |||||| Sbjct 11392 CCTGCAAAGATTAATCTCTGCTGATCAGGTGGAATTCCTTCTTTATCCTGAATTTTTGCT 11333 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||| ||||| ||||||||| || || || ||||||||||| || || || ||||| Sbjct 11332 TTTACGTTTTCGATCGTATCAGATGGCTCGACCTCCAAAGTTATTGTTTTACCCGTCAAG 11273 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || || || ||||||||| Sbjct 11272 GTTTTGACGAAAATCTGCATT 11252 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || | | || || ||||| || || |||||||||||||||||||| || Sbjct 11669 CCTGCAAAAATCAAGCGCTGCTGGTCTGGTGGAATCCCTTCCTTATCTTGAATCTTAGCC 11610 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || |||||| |||||| || |||||||| ||||| ||||| || | | Sbjct 11609 TTAACATTCTCTATGGTATCAGAAGGTTCAACCTCCAAAGTAATCGTTTTGCCGGTAAGC 11550 Query 82791 GTCTTTACAAATATCTGCAT 82810 |||||||| || |||||||| Sbjct 11549 GTCTTTACGAAAATCTGCAT 11530 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| |||| | || ||||| ||||| |||||||| || ||||||||||| ||| Sbjct 12537 CCTGCAAATATTAAGCGCTGCTGATCGGGAGGGATTCCTTCTTTGTCTTGAATCTTGGCT 12478 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || |||||||| |||||| || || ||||| | || ||||||||||| |||| Sbjct 12477 TTCACGTTTTCAATGGTATCAGATGGCTCAACTTCAAGGGTAATCGTCTTGCCGGTCAGG 12418 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || ||||||||||| Sbjct 12417 GTTTTGACGAATATCTGCAT 12398 Score = 107 bits (118), Expect = 4e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 82664 TTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAAT 82723 |||| | || ||||| || | | || ||||| || || || || || || |||||||| Sbjct 9774 TTGTATACCTGCAAATATCAAGCGCTGCTGATCCGGCGGAATACCCTCTTTGTCTTGAAT 9715 Query 82724 CTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCC 82783 || || || || || ||||| |||||| ||||||||||||||| || ||||| || || Sbjct 9714 TTTCGCCTTCACGTTCTCAATTGTATCAGAAGGTTCTACTTCCAATGTGATCGTTTTTCC 9655 Query 82784 TGTCAACGTCTTTACAAATATCTGCATTATTA 82815 |||||||| || || || || ||||| |||| Sbjct 9654 AGTCAACGTTTTGACGAAGATTTGCATGATTA 9623 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| ||||||| |||||||| || || || || || || || ||||||||||| Sbjct 13096 CCAGCAAATATTAGTCGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTGAATCTTTGCC 13037 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || || ||| || || || ||||| ||||| |||||||| || | Sbjct 13036 TTCACGTTTTCGATTGTGTCAGACGGCTCGACCTCCAATGTTATAGTCTTGCCAGTAAGA 12977 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || || ||||| |||||| Sbjct 12976 GTTTTAACGAATATTTGCATT 12956 >seq2467 Length=23714 Score = 131 bits (144), Expect = 3e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || | || ||| ||||| |||||||| ||||| || || |||||||| ||| Sbjct 9990 CCGGCAAAAATCAATCGTTGCTGATCCGGAGGTATCCCTTCTTTGTCCTGAATCTTCGCT 10049 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||||||||| || ||||| ||||||||||| || || || || ||||| Sbjct 10050 TTAACATTTTCAATCGTGTCCGATGGTTCAACTTCCAAAGTAATAGTTTTTCCAGTCAAT 10109 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 10110 GTCTTGACGAATATCTGCAT 10129 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || | | |||||||| ||||| || ||||| || |||||||| || || Sbjct 10842 CCTGCAAAAATCAAGCGCTGTTGATCGGGAGGGATGCCTTCTTTGTCTTGAATTTTCGCC 10901 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||| ||||| ||||| ||| |||||| ||||| || || || || || || |||||| Sbjct 10902 TTTACGTTTTCGATCGTGTCAGAAGGTTCCACTTCTAACGTAATTGTTTTACCCGTCAAC 10961 Query 82791 GTCTTTACAAATATCTGCATTATT 82814 |||||||| || ||||||||| || Sbjct 10962 GTCTTTACGAAGATCTGCATTTTT 10985 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || || |||| | |||||||| ||||| |||||||| || |||||||||||||| Sbjct 9414 CCTGCGAAAATTAAGCGCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTTGCC 9473 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| ||||||||| ||||| ||||| | |||||||||||||| || | Sbjct 9474 TTAACGTTTTCTATCGTATCAGATGGTTCCACTTCAAGCGTTATCGTCTTGCCCGTGAGG 9533 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| Sbjct 9534 GTCTTCACGAAAATTTGCAT 9553 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || || || | || || ||||| ||||| || || || ||||| ||||| || || Sbjct 10268 CCTGCGAAAATCAATCGCTGCTGATCCGGAGGAATCCCCTCTTTATCCTGAATTTTAGCC 10327 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||||||||| || ||||| |||||||| || || || ||||| || ||| Sbjct 10328 TTAACATTTTCAATCGTGTCCGACGGTTCAACTTCCAACGTAATAGTTTTGCCCGTTAAC 10387 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || ||||| ||||||||| Sbjct 10388 GTTTTGACAAAAATCTGCATT 10408 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||||| | || ||||| || || |||||||| || || || ||||| Sbjct 10548 TTGCCTGCGAAGATTAAGCGCTGCTGATCAGGTGGGATTCCTTCTTTGTCCTGGATCTTG 10607 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || ||||| ||||||||| || || ||||||||||| |||||||| || ||| Sbjct 10608 GCCTTGACGTTTTCGATCGTATCAGACGGCTCAACTTCCAAAGTAATCGTCTTTCCGGTC 10667 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 10668 AGAGTTTTAACGAAGATCTGCAT 10690 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 |||| || || |||||||| || | |||||| ||||| || || || || ||||| ||| Sbjct 9696 TCTATTTAATTACCAGCAAAAATCAATCTTTGCTGATCAGGGGGAATGCCCTCCTTGTCT 9755 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || ||||| ||||||||||| || || || || || |||| || || || Sbjct 9756 TGTATTTTAGCTTTAACATTTTCAATTGTGTCTGACGGCTCGACCTCCAGCGTGATAGTT 9815 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || || ||||| || ||||| Sbjct 9816 TTTCCCGTTAAAGTTTTGACAAAAATTTGCAT 9847 >seq1945 Length=26447 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||||||||| || | || |||||||| |||||||| ||| ||||| Sbjct 13464 ATACCTTCTTTATCTTGAATTTTGGACTTCACATTTTCGATCGTATCTGAAGGCTCTACC 13523 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || ||||| || | ||| || || ||||||||||| Sbjct 13524 TCTAACGTAATAGTTTTGCCGGTTAGCGTTTTCACGAATATCTGCAT 13570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981546220691904