Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq893 147 3e-30 >seq893 Length=1694367 Score = 147 bits (162), Expect = 3e-30 Identities = 332/491 (68%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 ||||||||||||||||| | ||| | ||| ||||| || || || | | ||| || || Sbjct 1631360 TTGTTTCCTCCCTGATCAACGTAGCGAGCCGTGTTGTTGTACACACGGAGCATGGGGATC 1631419 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACT 54297 | ||| ||||| | || ||||| || | ||| || | |||| |||||| || | | Sbjct 1631420 AGACCGTTGGAGGTGCCGTTGGTACCTGCGATCATCG-TTCCCGAGGCACGGATGC-AGT 1631477 Query 54298 AATTGATA-GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 | | || | || || || || || |||||||| | ||||| | | || | Sbjct 1631478 GAGCGTTAAGTCCGATGCCTCCGGCGGACTTAGAGATCAGGGCGCACTGCCACAGGGTCT 1631537 Query 54357 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 54416 ||||||| || || || || ||| | || || || || | ||| ||| Sbjct 1631538 TGAAGATGCCGTCGATGGAGTCGTCGTGCATCGTCAGGAGGAAGCACGAACTCATCTGGG 1631597 Query 54417 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 54476 | | ||||| || || || | |||||| || |||||||||||||| || || | Sbjct 1631598 GCTTGCAGGTTCCGGCGTTGAAGAGGGTAGGCGACGCGTGCGTAAACCAGCGATCCGACA 1631657 Query 54477 GTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 54535 || ||||| || ||||| |||| ||| || ||| | ||| || | ||| || || ||| Sbjct 1631658 TGAGGTTGTAGGTTTCGATGGCTGCGTCGATGTCCTCCTTG-TGGACTCCCACGGCTACA 1631716 Query 54536 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGAT 54595 ||||| | ||||||||| || | || ||||||| ||| || ||||||||||| || Sbjct 1631717 CGCATAAGCATGTGCTGCGGACGCTCGGTGATCTTGCCGTTGATCTTCAGCAAGTACGAC 1631776 Query 54596 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACT 54655 ||||| || || || || |||||| |||| | ||||| || || || | || | Sbjct 1631777 CGTTCCAGGGTCTTGAACCCGAAATAGGTGTACGCGAAGTCGCGGTCATACACGATTGCG 1631836 Query 54656 GAGTTGAGTTT 54666 ||||||||||| Sbjct 1631837 GAGTTGAGTTT 1631847 Score = 96.9 bits (106), Expect = 4e-15 Identities = 639/1024 (62%), Gaps = 38/1024 (4%) Strand=Plus/Plus Query 52909 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 52968 ||| ||||| | ||||| ||||| |||| || || || |||||| |||| || | Sbjct 1629974 ATAGCTCGGCTTGGCTATGTGGATGTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCG 1630033 Query 52969 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 53027 ||| || ||||| | ||||| ||| || | ||||||||||| || || || || || Sbjct 1630034 GTCGGCCGCCATCTCCATGATGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTC 1630093 Query 53028 GCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCC 53084 || || ||| | |||| || | || || || ||||| || | || ||| Sbjct 1630094 -CTGAAGATCCTTGGGAATGTCGGCGATACCTTGGATGGATCCGCCCTTCGAGATGATCT 1630152 Query 53085 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 53144 ||||||| || || | ||| | || ||| | | || | || ||||| |||| Sbjct 1630153 CGTTCTTGAGCTTGTCGTCCCACAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGAT 1630212 Query 53145 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 53204 | || | ||||| || || || | || | ||| ||||||| || ||| ||||| | Sbjct 1630213 TGACGATCTGAAAGTCACCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCT 1630272 Query 53205 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 | | ||||| || || || | || ||||| || || || || ||||| ||||| |||| Sbjct 1630273 CAATCGACTCGTTGTTGCCGAGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCA 1630332 Query 53265 ATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAA 53324 | ||| || | | |||| | || || || || | |||| | || Sbjct 1630333 GAAGACTGTTGCGCACGCCGTGCTTGGCAATCTTCTCCTTCAACACGGCCCAGTCGCACT 1630392 Query 53325 GATCCGACGGTACAAC--NNNNNNNNNNNNNNNTTGTAGA-ATACCGTTACTGGCGTA-- 53379 |||||| || || || | || | || || |||||| | | Sbjct 1630393 GATCCGTGGGCACCACGGGCTTGCCGTCTTCAGTCGTCCACATCTCG-TACTGGAGAACG 1630451 Query 53380 --------------CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 53425 ||| || | || || ||||||||||| | || ||| || ||||| Sbjct 1630452 CCACGACTCACAGGCGAACCCTCGTAGGTTTCGTATGGTCCGTACTGCTCCGCCAGTTCG 1630511 Query 53426 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 53485 || | || | | ||| || ||| ||||||||| |||| || | ||| | Sbjct 1630512 CATGAAGATTCCAGAGAGGCGTGGTAGATGACTTCGAAGATTCTCTTGTTCATATCACGG 1630571 Query 53486 GCTTCCAGGCT-ATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 53544 ||||| | || | ||| ||| | | | || || ||||| || | |||||||| Sbjct 1630572 GCTTCGGGACTGGTGAAAGGGA-AGCGCATCATCATGAAAGCGTCCGCAAGGCCTTGAAC 1630630 Query 53545 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 53604 ||||| || ||||| | || | | |||| || || | || || |||| || || || Sbjct 1630631 GCCAATTCCAATAGGACGGTGACGCATATTGGACGTTGCGGCCTCGAGAATCGGGTAGTA 1630690 Query 53605 ATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACAT---CCTT 53658 || || ||||| || || ||||| | |||| | | ||| | ||| ||| Sbjct 1630691 GTTGCCGTCGATAATCTTGTTAAGGTTGCGAGTGACGACTTTGGTGATCGCATGGAGCTT 1630750 Query 53659 CAGTTTG-AGAAAATCAAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCA 53717 | | | ||| || |||||| || | || || ||||| || || || |||| Sbjct 1630751 CTCATAGTCGAAGGTC---TTGTCC-TCCTTGACGAAGCGGTTCAGCGCGATCGAAGCCA 1630806 Query 53718 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 53777 || || ||||| || || | | || || || | ||||| ||||| || ||| Sbjct 1630807 AGTTGCACACGGCGACTTCTTCCGGCGACGAGTACTGAACGATCTCGGTGCACAGGTTAG 1630866 Query 53778 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 53837 |||||||||||||| | || || || || ||| ||| || || ||||| || | Sbjct 1630867 AGCACTTGATGGTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAGA 1630926 Query 53838 GAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAG 53897 | ||| | || || |||||||| ||||| || | |||| ||| ||||| |||||| Sbjct 1630927 GCATGTAAGGAGTTCCAGTTTCGATCTGCGAGGTGACAATCTCTTCCCAGAGAGCACGAG 1630986 Query 53898 CCTT 53901 |||| Sbjct 1630987 CCTT 1630990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593710007585760