Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq652 107 1e-18 seq1526 96.9 2e-15 seq1419 91.5 1e-13 seq1117 86.0 4e-12 >seq652 Length=32697 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || ||||| || ||||| |||||||||||| || ||| | || Sbjct 7101 AGAACGAGATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCGTTGAGGGTGCGGCCATCC 7042 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || ||||| || |||||||| || ||| | || ||||||||| Sbjct 7041 TCAAGCTGCTTGCCAGCAAAAATAAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCT 6982 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | |||||||||| | |||||| |||| || || || Sbjct 6981 TGAATCTTGGCCTTAACGTTCTCGATCGAATCGGACCCTTCGACTTCCAAAGTAATCGTC 6922 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || ||||||||||||||||| Sbjct 6921 TTTCCAGTAAGGGTCTTCACAAAGATCTGCAT 6890 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||| || ||| |||| || | ||||||||| ||||| Sbjct 6624 TCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAG 6565 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||| || || | || ||||||||| ||||| ||| | | Sbjct 6564 ATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 6505 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | ||||| || | |||||| || | |||||||| ||||| || ||||| || ||| Sbjct 6504 TCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGACA 6445 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 6444 AAGATCTGCATC 6433 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||| || ||| |||| || | ||||||||| ||||| Sbjct 6852 TCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAG 6793 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||| || || | || ||||||||| ||||| ||| | | Sbjct 6792 ATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 6733 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | ||||| || | |||||| || | |||||||| ||||| || ||||| || ||| Sbjct 6732 TCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGACA 6673 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 6672 AAGATCTGCAT 6662 >seq1526 Length=386723 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || ||||| || | ||| ||| ||||| |||||||||||| Sbjct 246310 TCCTCCACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGCT 246369 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| |||| || | |||||||| ||||| || || ||||||||||| || Sbjct 246370 GAGGGTACGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGG 246429 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | | | || | || | || ||||| Sbjct 246430 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGACGCCTCGAC 246489 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || || ||||| ||||| ||||| ||||| ||||| Sbjct 246490 TTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATTTGCAT 246537 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||| || | |||| || | ||||||||| ||||| Sbjct 246118 TTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCTTCCGTCCTCAAGCTGCTTGCCAGCGAA 246177 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| |||||||||||| || | | |||||||| ||||| ||| | | Sbjct 246178 GATGAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 246237 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| || | | ||||| || | |||||||| || ||||| ||||| ||||| Sbjct 246238 CTCGATCGTGTCCGAAGCCTCGACTTCTAGGGTGATGGTCTTTCCGGTCAGAGTCTTCAC 246297 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 246298 GAAGATCTGCAT 246309 >seq1419 Length=601844 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || || || || ||||| || ||||| |||||||||||| Sbjct 537975 TCCTCCGCGAAGACGAAGAACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGCT 537916 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| |||| || | |||||| || ||||| || | |||||||| ||| || Sbjct 537915 GAGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCGGGAGG 537856 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | || | |||| | || || Sbjct 537855 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGAAGCCTCAAC 537796 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| || || |||||||| || || ||||| ||||| Sbjct 537795 CTCAAGGGTAATGGTCTTCCCCGTGAGAGTCTTGACGAAGATTTGCAT 537748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCG--GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 || |||||||||||||||||| || || || ||| | || |||||||||||||| || | Sbjct 538622 TCCTTCTGTATGTTGTAGTCGCTGAGAG-TG-CGGCCATCTTCCAACTGCTTGCCGGCAA 538565 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 | || | ||||||||||| ||| | || |||||| || ||||| ||| | | Sbjct 538564 AGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTCACGT 538505 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | ||||| || | ||||| || || || || ||||| |||| Sbjct 538504 TCTCGATGGTGTCAGACCCCTCGACCTCAAGAGTGATCGTCTTTCCTGTCAGAGTCTTCA 538445 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 538444 CGAAGATCTGCAT 538432 >seq1117 Length=604131 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||| || ||| |||| || | ||||||||| ||||| Sbjct 393853 TCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAG 393794 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || || |||||||| || || | | ||||||||| || ||||| ||| | | Sbjct 393793 ATAAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTC--CTGGATTTTGGCCTTGACGT 393736 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || || || | |||||| || | |||||||| ||||| || ||||| || | Sbjct 393735 TCTCAATTGAGTCAGAACCTTCGACCTCAAGTGTGATGGTCTTGCCCGTAAGAGTCTTGA 393676 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 393675 CGAAGATCTGCAT 393663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323065849718720