Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq893 111 3e-19 seq1082 107 4e-18 seq1180 86.0 1e-11 >seq893 Length=1694367 Score = 111 bits (122), Expect = 3e-19 Identities = 175/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || ||||| ||||| | || || || | ||||||||| || || Sbjct 1631793 TTCAAGACCCTGGAACGGTCGTACTTGCTGAAGATCAACGGCAAGATCACCGAGCGTCCG 1631734 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || || || | |||||||| ||||| || | || Sbjct 1631733 CAGCACATGCTTATGCGTGTAGCCGTGGGAGTCCACAAGGAGGACATCGACGCAGCCATC 1631674 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 || || |||| | ||| || |||||| | || || || | || || ||||||||| Sbjct 1631673 GAAACCTACAACCTCATGTCGGATCGCTGGTTTACGCACGCGTCGCCTACCCTCTTCAAC 1631614 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||| ||| ||| ||| |||| |||||||| || || | ||||| |||||||| Sbjct 1631613 GCCGGAACCTGCAAGCCCCAGATGAGTTCGTGCTTCCTCCTGACGATGCACGACGACTCC 1631554 Query 249073 GTCGACGGCAT 249083 |||||||||| Sbjct 1631553 ATCGACGGCAT 1631543 >seq1082 Length=994433 Score = 107 bits (118), Expect = 4e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 254213 CAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCG 254272 |||| |||| || |||||||||||||| |||||||| | | ||| || ||||||| || Sbjct 698755 CAAGATCGTCATTTTGGACGAGGCGGACGCCATGACGACGGCCGCCCAAGCCGCCCTGCG 698814 Query 254273 CCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTC 254332 | |||||||||| | | ||| |||||| || | ||| | ||||||||| | || Sbjct 698815 CAGAACGATGGAAAGCGAATCCAGGACGACGCGGTTCTTCCTTATCTGCAACTACATCTC 698874 Query 254333 GAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 | ||||| | || || | ||||| ||||||||||| ||||||| Sbjct 698875 AAGAATCATTGATCCACTCACCTCTCGATGCGCCAAGTTCCGATTCA 698921 >seq1180 Length=260818 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC-- 248950 ||||||| | ||||||| ||||| || || || ||||| || ||||| || || ||| Sbjct 212676 CAGCACACGCTGATGCGTGTGGCCGTAGGAATCCACAAAGAGGACATTGAT-GC-TGCCA 212619 Query 248951 TCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCA 249010 |||| || |||| || ||| ||||| ||| | || || | || | || |||| | Sbjct 212618 TCGAAACCTACAACGTCATGTTGGAACGTTGGTTCACGCACTCGTCAGCCACCATCTTTA 212559 Query 249011 ACGCCGGTACC-GTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGAC 249069 ||||||| || || |||| || || ||||||||||||| || | ||||| ||||| Sbjct 212558 ACGCCGGAACTTGTAAACA-TCTAATGTGCTCGTGCTTTCTCCTCACTATGCAGAACGAC 212500 Query 249070 TCTGTCGACGGCAT 249083 | |||| ||||| Sbjct 212499 ACCATCGATGGCAT 212486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073744910578816