Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1419 131 1e-25 seq652 123 2e-23 seq1526 122 7e-23 seq1117 107 2e-18 >seq1419 Length=601844 Score = 131 bits (144), Expect = 1e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||| ||| ||||||||| |||||||||||| | || || |||| || || || Sbjct 537950 TGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCAAGCTGC 537891 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 ||||||||||| ||||| ||||| || |||||||| | |||||||||||| || || Sbjct 537890 TTTCCGGCGAAGATCAAGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTG 537831 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | |||| | |||| ||||| | |||||| ||||| ||||| Sbjct 537830 GCCTTGACATTTTCGATAGTGTCGGAAGCCTCAACCTCAAGGGTAATGGTCTTCCCCGTG 537771 Query 45314 AGAGTCTTCACAAAGATTTGCATGT 45338 |||||||| || ||||||||||||| Sbjct 537770 AGAGTCTTGACGAAGATTTGCATGT 537746 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||| || || |||||||||||| | || | |||| || Sbjct 538412 ACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCG 538353 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || ||||| || | ||||| ||||||||||| | || ||||||||| Sbjct 538352 AGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGG 538293 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||| ||||||| |||||||||||| Sbjct 538292 ATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCCAGGGTAATCGTCTTT 538233 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| ||||| |||||| Sbjct 538232 CCTGTCAGAGTCTTCACGAAGATCTGCATG 538203 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| | || ||| | || ||| Sbjct 538640 ACCAAGTGGAGGGTCGACTCCTTCTGTATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCC 538581 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || ||||| || ||||| ||||| ||||| || || | |||||||| || Sbjct 538580 AACTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGG 538521 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||| ||||| | || |||||||| Sbjct 538520 ATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGACCTCAAGAGTGATCGTCTTT 538461 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| ||||| |||||| Sbjct 538460 CCTGTCAGAGTCTTCACGAAGATCTGCATG 538431 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| | || || |||| || || || || || ||||| Sbjct 539126 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAA 539067 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || |||||||| | || ||||||||| || || || || Sbjct 539066 GATAAGACGCTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTT 539007 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| ||||| ||||||| ||| |||||||| || |||||||||||||| Sbjct 539006 CTCAATGGTGTCAGATCCCTCGACCTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCAC 538947 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 538946 GAAGATCTGCATG 538934 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||| || || ||||||||||| ||| ||| | || || Sbjct 538184 ACCAAGTGGAGGGTTGACTCTTTTTGGATGTTGTAGTCACTCAAAGTGCGGCCATCCTCG 538125 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || ||||| ||||| ||||| || || | |||||||| || Sbjct 538124 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGG 538065 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||| ||||||| |||||||||||| Sbjct 538064 ATCTTAGCCTTCACGTTCTCGATGGTGTCGGATCCCTCAACCTCCAAGGTAATCGTCTTT 538005 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| || ||||||||||| Sbjct 538004 CCGGTCAGCGTCTTGACGAAGATTTGCAT 537976 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || ||||| || || | ||||| ||||||||||| | || ||||||||| || || Sbjct 538802 TTACCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTG 538743 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| ||||| ||||| | ||||||||||| || ||| Sbjct 538742 GCCTTCACGTTCTCGATGGTGTCAGATCCCTCAACCTCAAGAGTAATCGTCTTTCCGGTC 538683 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 ||||||||||| ||||| |||||| Sbjct 538682 AGAGTCTTCACGAAGATCTGCATG 538659 >seq652 Length=32697 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || |||||| ||||||||| |||||||||||||| || || |||| Sbjct 6873 AAAACCAAATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCC 6814 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || ||||| || | ||||| || || ||||| | |||||||||||| Sbjct 6813 TCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC 6754 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | ||| ||| || ||||| | ||| || ||| Sbjct 6753 TGGATCTTGGCCTTGACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATGGTC 6694 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| |||||||| |||||||| |||||| Sbjct 6693 TTGCCCGTAAGAGTCTTGACAAAGATCTGCATG 6661 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||||| || || |||| || || || Sbjct 6637 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTG 6578 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| || || ||||| | |||||||||||| || || Sbjct 6577 CTTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTT 6518 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||| ||| || ||||| | ||| || ||||||||||| Sbjct 6517 GGCCTTGACGTTCTCAATCGAGTCAGAACCTTCGACCTCAAGGGTGATGGTCTTGCCCGT 6458 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||| |||||||| ||||| || Sbjct 6457 AAGAGTCTTGACAAAGATCTGCATCTT 6431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||||| || ||| | || || || || || || || || Sbjct 7081 CTCCTTCTGGATGTTGTAGTCGTTGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 7022 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || || || || | ||||||||||| ||| || |||||| Sbjct 7021 AATAAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGCCTTAACGTT 6962 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | || || || || |||| ||||||||||| || || || |||||||| Sbjct 6961 CTCGATCGAATCGGACCCTTCGACTTCCAAAGTAATCGTCTTTCCAGTAAGGGTCTTCAC 6902 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 6901 AAAGATCTGCAT 6890 >seq1526 Length=386723 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| |||||||| |||||||||||| | || || |||| || Sbjct 246329 ACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCG 246388 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || ||||| || | ||||| ||||| ||||| | || ||||||||| Sbjct 246389 AGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGG 246448 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| |||| || |||| ||| |||||||| Sbjct 246449 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGACGCCTCGACTTCCAGGGTGATCGTCTTT 246508 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| |||||||||||| Sbjct 246509 CCGGTCAGAGTCTTCACGAAGATTTGCATG 246538 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || |||||| |||||||| |||||||||||| | || | |||| || Sbjct 246101 ACCAGATGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCTTCCGTCCTCA 246160 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||||||||| | || ||||||||| Sbjct 246161 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGG 246220 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| | |||| || || | ||| || ||||| Sbjct 246221 ATCTTGGCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCTAGGGTGATGGTCTTT 246280 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| ||||| Sbjct 246281 CCGGTCAGAGTCTTCACGAAGATCTGCAT 246309 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || ||||| || || | ||||| ||||||||||| | || ||||||||| ||| || Sbjct 247468 TTACCGGCAAAGATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGAATCTTG 247527 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | ||||| | |||| || |||| ||| |||||||| || ||| Sbjct 247528 GCCTTGACGTTCTCGATCGTGTCCGAAGCCTCGACTTCCAGGGTGATCGTCTTTCCGGTC 247587 Query 45314 AGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| ||||| |||||||||||||| Sbjct 247588 AGAGTTTTCACGAAGATTTGCATGTT 247613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 45200 GCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTA 45259 ||||| || | ||||| ||||||||||| | || ||||||||| || || ||| Sbjct 247199 GCGAAGATAAGGCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTC 247258 Query 45260 ACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTC 45319 || | | | ||||| |||| || |||| ||| |||||||| || ||||||||| Sbjct 247259 ACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGGGTGATCGTCTTTCCGGTCAGAGTC 247318 Query 45320 TTCACAAAGATTTGCATG 45337 ||||| |||||||||||| Sbjct 247319 TTCACGAAGATTTGCATG 247336 >seq1117 Length=604131 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| |||||||||||||| || || |||| || || || Sbjct 393865 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGTTGAGAGTCCGGCCGTCCTCGAGCTGC 393806 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| || | ||||| || || ||||| | |||||||||||| ||||| Sbjct 393805 TTGCCAGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATTTTG 393746 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | ||| ||| || ||||| | || || ||||||||||| Sbjct 393745 GCCTTGACGTTCTCAATTGAGTCAGAACCTTCGACCTCAAGTGTGATGGTCTTGCCCGTA 393686 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 |||||||| || ||||| |||||| Sbjct 393685 AGAGTCTTGACGAAGATCTGCATG 393662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067679002802