Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq893 138 1e-27 >seq893 Length=1694367 Score = 138 bits (152), Expect = 1e-27 Identities = 330/491 (67%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 ||||||||||||||||| | ||| | ||| ||||| || || || | | ||| || || Sbjct 1631360 TTGTTTCCTCCCTGATCAACGTAGCGAGCCGTGTTGTTGTACACACGGAGCATGGGGATC 1631419 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTTGCACGAATATTACT 66328 | ||| ||||| || || ||||| || | ||| || | |||| ||||| || | | Sbjct 1631420 AGACCGTTGGAGGTGCCGTTGGTACCTGCGATCATCG-TTCCCGAGGCACGGATGC-AGT 1631477 Query 66329 AATTGATA-GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 66387 | | || | || || || || || |||||||| | ||||| | | || | Sbjct 1631478 GAGCGTTAAGTCCGATGCCTCCGGCGGACTTAGAGATCAGGGCGCACTGCCACAGGGTCT 1631537 Query 66388 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 66447 ||||||| || || || || ||| | || || || || | ||| ||| Sbjct 1631538 TGAAGATGCCGTCGATGGAGTCGTCGTGCATCGTCAGGAGGAAGCACGAACTCATCTGGG 1631597 Query 66448 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 66507 | | ||||| || || || | |||||| || |||||||||||||| || || | Sbjct 1631598 GCTTGCAGGTTCCGGCGTTGAAGAGGGTAGGCGACGCGTGCGTAAACCAGCGATCCGACA 1631657 Query 66508 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 66566 || ||||| || || || |||| ||| || ||| | ||| || | ||| || || ||| Sbjct 1631658 TGAGGTTGTAGGTTTCGATGGCTGCGTCGATGTCCTCCTTG-TGGACTCCCACGGCTACA 1631716 Query 66567 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 66626 ||||| | ||||||||| || | || ||||||| ||| || |||| |||||| || Sbjct 1631717 CGCATAAGCATGTGCTGCGGACGCTCGGTGATCTTGCCGTTGATCTTCAGCAAGTACGAC 1631776 Query 66627 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 66686 ||||| || || || || |||||| |||| | ||||| || || || | || | Sbjct 1631777 CGTTCCAGGGTCTTGAACCCGAAATAGGTGTACGCGAAGTCGCGGTCATACACGATTGCG 1631836 Query 66687 GAGTTGAGTTT 66697 ||||||||||| Sbjct 1631837 GAGTTGAGTTT 1631847 Score = 104 bits (114), Expect = 3e-17 Identities = 241/360 (67%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 64940 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 64999 ||| ||||| | ||||| ||||| |||| || || || |||||| |||| || | Sbjct 1629974 ATAGCTCGGCTTGGCTATGTGGATGTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCG 1630033 Query 65000 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 65058 ||| || ||||| | ||||| ||| || | ||||||||||| || || || || || Sbjct 1630034 GTCGGCCGCCATCTCCATGATGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTC 1630093 Query 65059 GCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCC 65115 || || ||| | |||| || | || || |||||||| || | | || ||| Sbjct 1630094 -CTGAAGATCCTTGGGAATGTCGGCGATACCTTGGATGGATCCGCCCTTCGAGATGATCT 1630152 Query 65116 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 65175 ||||||| || || | ||| | || ||| | | || | || ||||| |||| Sbjct 1630153 CGTTCTTGAGCTTGTCGTCCCACAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGAT 1630212 Query 65176 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 65235 | || | ||||| || || || | || | ||| ||||||| || ||| ||||| | Sbjct 1630213 TGACGATCTGAAAGTCACCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCT 1630272 Query 65236 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 65295 | | ||||| || || || | || ||||| || || || || ||||| ||||| |||| Sbjct 1630273 CAATCGACTCGTTGTTGCCGAGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCA 1630332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159949176080