Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1419 109 5e-19 seq1101 84.2 2e-11 >seq1419 Length=601844 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | ||| | || ||||| || || ||||| || ||||| Sbjct 539162 GCCACCACGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 539103 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||| ||||| || ||||| |||| ||||| |||||||||||||| Sbjct 539102 GAGGGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGG 539043 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || ||| | | || | ||||| | ||| || Sbjct 539042 GATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGATCCCTCGAC 538983 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||| ||||||| || || ||||| || ||||| Sbjct 538982 CTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 538935 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||||||||| ||||| || || || Sbjct 538203 GCCTCCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCTTTTTGGATGTTGTAGTCACT 538144 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || |||||||| || || ||| |||||| || ||||| || || || Sbjct 538143 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGG 538084 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| || || | | || | ||||||| ||| || Sbjct 538083 AATGCCCTCCTTATCTTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGGATCCCTCAAC 538024 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||| ||||||| ||| || ||||| |||||||| Sbjct 538023 CTCCAAGGTAATCGTCTTTCCGGTCAGCGTCTTGACGAAGATTTGCAT 537976 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||||||||| ||||| || ||||| Sbjct 538431 GCCTCCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCGCT 538372 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||| ||||| || || ||||| |||| || || ||||| |||||||| Sbjct 538371 GAGGGTTCTTCCGTCCTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGG 538312 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||| | ||| || Sbjct 538311 AATTCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCAGACCCCTCGAC 538252 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||| || |||| || || ||||| || ||||| Sbjct 538251 CTCCAGGGTAATCGTCTTTCCTGTCAGAGTCTTCACGAAGATCTGCAT 538204 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||||| | || | |||||| ||||| || || Sbjct 537944 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCTTCAAGCTGCTTTCCG 537885 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| || |||||||||||||| ||||| || ||||| ||| || || Sbjct 537884 GCGAAGATCAAGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 537825 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||||| | ||| ||||||| ||| | ||||| || || | || Sbjct 537824 ACATTTTCGATAGTGTCGGAAGCCTCAACCTCAAGGGTAATGGTCTTCCCCGTGAGAGTC 537765 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 537764 TTGACGAAGATTTGCAT 537748 >seq1101 Length=331277 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| ||||||| || ||||| || ||||| || ||||| || || ||| || Sbjct 90959 TTACCGGCAAAGATCAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTATCCTGGATCTTG 90900 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| || ||| ||||| | ||| | |||||||||||| Sbjct 90899 GCCTTGACATTCTCAATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCGGTC 90840 Query 139742 AACGTTTTTACGAATATTTGCATAGC 139767 || || || ||||| || ||||| || Sbjct 90839 AAAGTCTTGACGAAAATCTGCATGGC 90814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496054314350400