Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq893 143 4e-29 >seq893 Length=1694367 Score = 143 bits (158), Expect = 4e-29 Identities = 331/491 (67%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 ||||||||||||||||| | ||| | ||| ||||| || || || | | ||| || || Sbjct 1631360 TTGTTTCCTCCCTGATCAACGTAGCGAGCCGTGTTGTTGTACACACGGAGCATGGGGATC 1631419 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACT 80207 | ||| ||||| || || ||||| || | ||| || | |||| |||||| || | | Sbjct 1631420 AGACCGTTGGAGGTGCCGTTGGTACCTGCGATCATCG-TTCCCGAGGCACGGATGC-AGT 1631477 Query 80208 AATTGATA-GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 80266 | | || | || || || || || |||||||| | ||||| | | || | Sbjct 1631478 GAGCGTTAAGTCCGATGCCTCCGGCGGACTTAGAGATCAGGGCGCACTGCCACAGGGTCT 1631537 Query 80267 CATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 80326 ||||||| || ||| || || ||| | || || || || | ||| ||| Sbjct 1631538 TGAAGATGCCGTCGATGGAGTCGTCGTGCATCGTCAGGAGGAAGCACGAACTCATCTGGG 1631597 Query 80327 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 80386 | | ||||| || || || | |||||| || |||||||||||||| || |||| Sbjct 1631598 GCTTGCAGGTTCCGGCGTTGAAGAGGGTAGGCGACGCGTGCGTAAACCAGCGATCCGACA 1631657 Query 80387 GTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACA 80445 || ||||| || || || |||| || || ||| | ||| || | ||| || || ||| Sbjct 1631658 TGAGGTTGTAGGTTTCGATGGCTGCGTCGATGTCCTCCTTG-TGGACTCCCACGGCTACA 1631716 Query 80446 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGAT 80505 ||||| | ||||||||| || | || ||||||| || || |||| |||||| || Sbjct 1631717 CGCATAAGCATGTGCTGCGGACGCTCGGTGATCTTGCCGTTGATCTTCAGCAAGTACGAC 1631776 Query 80506 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 80565 ||||| || || || || |||||| |||| | ||||| || || || | || | Sbjct 1631777 CGTTCCAGGGTCTTGAACCCGAAATAGGTGTACGCGAAGTCGCGGTCATACACGATTGCG 1631836 Query 80566 GAGTTGAGTTT 80576 ||||||||||| Sbjct 1631837 GAGTTGAGTTT 1631847 Score = 100 bits (110), Expect = 4e-16 Identities = 240/360 (67%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 78819 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 78878 ||| ||||| | ||||| ||||| |||| || || || |||||| |||| || | Sbjct 1629974 ATAGCTCGGCTTGGCTATGTGGATGTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCG 1630033 Query 78879 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 78937 ||| || ||||| | ||||| ||| || | ||||||||||| || || || || || Sbjct 1630034 GTCGGCCGCCATCTCCATGATGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTC 1630093 Query 78938 GCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCC 78994 || || ||| | |||| || | || || |||||||| || | | || ||| Sbjct 1630094 -CTGAAGATCCTTGGGAATGTCGGCGATACCTTGGATGGATCCGCCCTTCGAGATGATCT 1630152 Query 78995 TATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 79054 ||||||| || || | ||| | || ||| | | || | || ||||| |||| Sbjct 1630153 CGTTCTTGAGCTTGTCGTCCCACAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGAT 1630212 Query 79055 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTT 79114 | || | ||||| || || || | || | ||| ||||||| || ||| || || | Sbjct 1630213 TGACGATCTGAAAGTCACCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCT 1630272 Query 79115 CCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCA 79174 | | ||| || || || || | || ||||| || || || || ||||| ||||| |||| Sbjct 1630273 CAATCGACTCGTTGTTGCCGAGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCA 1630332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718254775801680