Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq893 125 1e-23 >seq893 Length=1694367 Score = 125 bits (138), Expect = 1e-23 Identities = 327/491 (67%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 ||||||||||||||||| | ||| | ||| ||||| || || || | | ||| || || Sbjct 1631360 TTGTTTCCTCCCTGATCAACGTAGCGAGCCGTGTTGTTGTACACACGGAGCATGGGGATC 1631419 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTGCT 72290 | ||| ||||| | || ||||| || | ||| || | |||| |||||| || | | Sbjct 1631420 AGACCGTTGGAGGTGCCGTTGGTACCTGCGATCATCG-TTCCCGAGGCACGGATGCAG-T 1631477 Query 72291 AATTGATA-GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 | | || | || || || || || |||||||| | ||||| | | || | Sbjct 1631478 GAGCGTTAAGTCCGATGCCTCCGGCGGACTTAGAGATCAGGGCGCACTGCCACAGGGTCT 1631537 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409 ||||||| || || || || ||| | || || || || | ||| ||| Sbjct 1631538 TGAAGATGCCGTCGATGGAGTCGTCGTGCATCGTCAGGAGGAAGCACGAACTCATCTGGG 1631597 Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 | | ||||| || || || | |||||| || |||||||||||||| || |||| Sbjct 1631598 GCTTGCAGGTTCCGGCGTTGAAGAGGGTAGGCGACGCGTGCGTAAACCAGCGATCCGACA 1631657 Query 72470 GTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACA 72528 || ||||| || || || |||| || || ||| | ||| || | ||| || || ||| Sbjct 1631658 TGAGGTTGTAGGTTTCGATGGCTGCGTCGATGTCCTCCTTG-TGGACTCCCACGGCTACA 1631716 Query 72529 CGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGAT 72588 ||||| | ||| ||||| || | || ||||||| || || |||| |||||| || Sbjct 1631717 CGCATAAGCATGTGCTGCGGACGCTCGGTGATCTTGCCGTTGATCTTCAGCAAGTACGAC 1631776 Query 72589 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 72648 ||||| || || || || |||||| |||| | ||||| || || || | || | Sbjct 1631777 CGTTCCAGGGTCTTGAACCCGAAATAGGTGTACGCGAAGTCGCGGTCATACACGATTGCG 1631836 Query 72649 GAATTGAGTTT 72659 || |||||||| Sbjct 1631837 GAGTTGAGTTT 1631847 Score = 122 bits (134), Expect = 1e-22 Identities = 252/370 (68%), Gaps = 5/370 (1%) Strand=Plus/Plus Query 70902 ATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCT 70961 |||||| || | ||||||||| || |||| |||||| || |||||| |||| || | Sbjct 1629974 ATAGCTCGGCTTGGCTATGTGGATGTTCAGCGACTGCGACTGGTCGATGTAGGCGCCGCG 1630033 Query 70962 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 71020 ||| || ||||| | ||||| ||| || | ||||||||||| || || || || || Sbjct 1630034 GTCGGCCGCCATCTCCATGATGTCCTTCTGCGAAATTTCCCAAACTGTCTTGTACAAGTC 1630093 Query 71021 GCTTAATATCTTCTGGAAGGTTTGT-ATTC--TGAATGGATCCACCATCTGCAATAATCC 71077 || || ||| | |||| || | || | || |||||||| || | | || ||| Sbjct 1630094 -CTGAAGATCCTTGGGAATGTCGGCGATACCTTGGATGGATCCGCCCTTCGAGATGATCT 1630152 Query 71078 TATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 71137 || |||| || || | ||| | || ||| | | || | || |||||||||| Sbjct 1630153 CGTTCTTGAGCTTGTCGTCCCACAGGTTCAGCTCAACCAGATCTTTCAGCAGATGAGGAT 1630212 Query 71138 TAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTT 71197 | || | ||||| || || || | || | ||| ||||||| || ||| ||||| | Sbjct 1630213 TGACGATCTGAAAGTCACCGGAGAGGACGCGGCGACTGTAAATGTTGGAGGTGTACGGCT 1630272 Query 71198 CCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 71257 | | ||||| || || || | || ||||| || || || || ||||| ||||| |||| Sbjct 1630273 CAATCGACTCGTTGTTGCCGAGGATCTGAGCGGTGGACGCTGTGGGCATCGGTGCGACCA 1630332 Query 71258 ATAGACTATT 71267 ||||| || Sbjct 1630333 GAAGACTGTT 1630342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671126096007120