Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1526 98.7 1e-15 seq1419 82.4 8e-11 >seq1526 Length=386723 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | ||| | || ||||| || || |||||||| ||||| Sbjct 246311 CCTCCACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGCTG 246370 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||||||||| || ||||| |||| || || ||||| || ||||| Sbjct 246371 AGGGTACGGCCGTCTTCGAGTTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGG 246430 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||||| | || ||| Sbjct 246431 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGACGCCTCGACT 246490 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| ||||||| || || ||||| |||||||| Sbjct 246491 TCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATTTGCAT 246537 >seq1419 Length=601844 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | || | || || || || || |||||||| ||||| Sbjct 539162 GCCACCACGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 539103 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||| || || || ||||| |||| ||||| |||||||||||||| Sbjct 539102 GAGGGTACGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGG 539043 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || ||| | | || | ||||| | || || Sbjct 539042 GATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGATCCCTCGAC 538983 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| ||||||| || || ||||| || ||||| Sbjct 538982 CTCCAGGGTGATCGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 538935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507004500543840