Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq964 199 6e-46 seq868 138 2e-27 seq893 104 3e-17 >seq964 Length=244507 Score = 199 bits (220), Expect = 6e-46 Identities = 421/619 (68%), Gaps = 27/619 (4%) Strand=Plus/Minus Query 125146 TGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCT 125204 |||| ||||| |||| || |||||||| ||||| || || || || || || ||| | Sbjct 34366 TGGCGTTCTTCGCCGCTTCGGATGGAATTGTCAATGAAAACCTCGTCGAG-CGCTTCACC 34308 Query 125205 CAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAAC 125264 || ||| | | || || || | | ||||||| | ||||| || | | ||| | Sbjct 34307 CAGGAGGTCAAGATGCCCGAAGCACTCTCCTTTTACAGCTTCCAGATGGCGGTAGAGGGC 34248 Query 125265 GTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAA 125324 | ||||| || |||||||| | | |||| || ||| | ||| || ||| | Sbjct 34247 ATCCACTCCGAGATGTACTCCAAAATGATCGAAGCTTACGTCATCGACCC-CAAAGAGCG 34189 Query 125325 CA-CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGT 125383 || ||||||||| ||||| | | | | || | || || ||||| | |||| Sbjct 34188 CAACATGCTCTTCAACGCCCTGCAAGAGTTCCCCTGCATCAAGAAGAAGGCCGATTGGGC 34129 Query 125384 GATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCAT-----TC 125438 | | || ||||||| ||| | || |||| | || || ||| ||| ||| || Sbjct 34128 GCTCCGCTGGATCGGCGACAAGAACGCTTCCTTCG--GA---ACTCGTGTCATCGCGTTC 34074 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498 |||||||| || ||||| || || |||||| || || |||||||| |||||||||||| Sbjct 34073 GCCGCCGTTGAAGGCATTTTTTTCTCGGGTTCCTTCGCTGCCATCTTCTGGCTCAAGAAG 34014 Query 125499 CGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTA 125558 || ||||| ||||| ||||| || |||||||||||| | || || |||||||| || || Sbjct 34013 CGTGGACTGATGCCTGGACTCACCCACAGTAACGAGCTGATCTCCCGAGACGAAGGACTT 33954 Query 125559 CACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAG-ATCCAG 125617 ||| | ||||| ||| ||| ||| ||| |||||| | |||| | || Sbjct 33953 CACCGCGACTTCGCCTGTCTTATGT---ACAAGTATCTG--------GAGCAGAAGCCCT 33905 Query 125618 CG-ATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAA 125676 || | || ||| ||| | ||| | || || |||| ||| || || |||| ||| | Sbjct 33904 CGAACGAGAAGATCAATGAAATTATCCGTGAAGCGGTGAAGATCGAGCAGGAGTATCTCA 33845 Query 125677 CCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAG 125736 |||| || || || || ||||||||||||||||||| | || |||| | ||||||| | Sbjct 33844 CCGAGTCGCTTCCCGTGGACATGATTGGCATGAACTGCGACCTGATGTCCCAGTACATCG 33785 Query 125737 AGTTTGTGGCAGATCGTCT 125755 | | || || || | ||| Sbjct 33784 AATACGTCGCCGACCATCT 33766 >seq868 Length=379790 Score = 138 bits (152), Expect = 2e-27 Identities = 235/341 (69%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||||| ||||||| || | || || |||| ||| | ||||||||| || ||||| Sbjct 81556 TTGCGGTAGAAGATGAGGGCGCCGCGGGGTCCTCGGAGCGACTTGTGCGTGGTGGTGGTG 81497 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| ||||| || || || | ||| || || | ||| || || ||| Sbjct 81496 ACAATGTCCGCGTACTCGAACGGCGAGGGGACGACGCCTCCGGCCACCAATCCGGCGATG 81437 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || ||||| |||||||| | | |||| || || |||| ||||| || Sbjct 81436 TGGGCCATATCCGCCATCAGGTACGCGCCGCACTTGTCCGCGATCTTCCGGAACCGGGCG 81377 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| | |||| ||||| || ||||||| | || | | | || | || || Sbjct 81376 TAGTCCAGATGGCGAGCGTAGCAGCTCATGCCGGCGACAATAACCTTCGGCCTAAAGAGC 81317 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 | || |||| |||| ||| | ||||||| || || ||| || |||||||||||| Sbjct 81316 ATTGCGTTCTCCTCAAGCTTGTCGTAGTCGATAAGGCCGGTCGCGGGGTCCACCTTGTAC 81257 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTTGCG 127442 ||||| ||||| |||| |||||| |||| || ||||| Sbjct 81256 GGCATCGACTCGAAGAAGATCGATGTAACGGAGACCTTGCG 81216 >seq893 Length=1694367 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 97134 TACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATC 97193 |||||||| ||||| || ||| || || ||| | || || | || ||| | | || Sbjct 1631023 TACGAGCAGGAGGGACGCTACAAGAAGCGCGTCAAGGCTCGTGCTCTCTGGGAAGAGATT 1630964 Query 97194 GTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGC 97253 || || | ||| | || ||||||||||| ||||| ||||||||||| || || ||| Sbjct 1630963 GTCACCTCGCAGATCGAAACTGGAACTCCTTACATGCTCTACAAGGACGCCTGCAACCGC 1630904 Query 97254 AACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTA 97313 || ||||| | || |||| ||||||||| |||| || |||||||| || || || Sbjct 1630903 AAGTCGAACCAGCAGAACCTGGGAACCATCAAGTGCTCTAACCTGTGCACCGAGATCGTT 1630844 Query 97314 GAGTACGCCTCTCCGGACGA 97333 ||||| | || ||||| || Sbjct 1630843 CAGTACTCGTCGCCGGAAGA 1630824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044730819120